RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 XRCC1P18887 633 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 TNNI3P19429 210 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 TTKP33981 857 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 MAGEA10P43363 369 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 FSTL4Q6MZW2 842 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 FAM151BQ6UXP7 276 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 GPRIN3Q6ZVF9 776 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 KCTD8Q6ZWB6 473 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SLC51AQ86UW1 340 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 GPR180Q86V85 440 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 POF1BQ8WVV4 589 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 MRPS31Q92665 395 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 APBB2Q92870 758 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 LINGO1Q96FE5 620 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 KCNS3Q9BQ31 491 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 UBA2Q9UBT2 640 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 COQ6Q9Y2Z9 468 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 BTNL10A8MVZ5 291 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 TSPAN4O14817 238 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 AREL1O15033 823 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 TRIM3O75382 744 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 CABYRO75952 493 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 AP2A2O94973 939 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 OR4Q2P0C623 313 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 TUFMP49411 452 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 QPRTQ15274 297 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 HSDL1Q3SXM5 330 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SLC9B1Q4ZJI4 515 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 RNASEH2BQ5TBB1 312 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 LRRC38Q5VT99 294 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ESRP1Q6NXG1 681 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 MOB2Q70IA6 237 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SMYD1Q8NB12 490 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SMARCD1Q96GM5 515 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CAMKK2Q96RR4 588 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 GPATCH1Q9BRR8 931 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 KLHL28Q9NXS3 571 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ANKRD6Q9Y2G4 727 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 MFHAS1Q9Y4C4 1052 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 AGLP35573 1532 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PHRF1Q9P1Y6 1649 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 FAM240BA0A1B0GVZ2 78 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CXorf49A8MYA2 514 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 TCEA3O75764 348 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CLPXO76031 633 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 DDNO94850 711 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 RTN3O95197 1032 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 FCER2P06734 321 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 IL1R1P14778 569 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 NPR3P17342 541 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 SLC26A3P40879 764 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 MTPNP58546 118 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 IRF9Q00978 393 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 NAB1Q13506 487 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 VPS72Q15906 364 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ZFP69Q49AA0 526 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PMF1Q6P1K2 205 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PPP1R14BQ96C90 147 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CSPG4P5Q96PW8 444 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ATG10Q9H0Y0 220 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PRDM16Q9HAZ2 1276 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PDP1Q9P0J1 537 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 FAM25EA8MYX2 175 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 C9IYK1 514 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PLIN3O60664 434 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CELF2O95319 508 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 CCNE2O96020 404 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 GRK4P32298 578 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CHRNA4P43681 627 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 BRCC3P46736 316 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 IDH3AP50213 366 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 KPNA1P52294 538 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 THOP1P52888 689 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 GJA9P57773 515 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 CDC42P60953 191 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 LIPEQ05469 1076 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ACOX1Q15067 660 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 STYK1Q6J9G0 422 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 ADGRD1Q6QNK2 874 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 PLET1Q6UQ28 207 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 COX4I2Q96KJ9 171 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 FCRL2Q96LA5 508 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 RTKNQ9BST9 563 aa8.69□□□□□ -1.02
RTN3-202ENST00000339997 FAM126AQ9BYI3 521 aaPredicted RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 WBP11Q9Y2W2 641 aaKnown RBP8.69□□□□□ -1.02
RTN3-202ENST00000339997 TTC24A2A3L6 582 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 EI24O14681 340 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ANGPTL1O95841 491 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 HLA-DQA2P01906 255 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 GMPRP36959 345 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 LAPTM4AQ15012 233 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SPRED3Q2MJR0 410 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PHTF2Q8N3S3 785 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ADCY4Q8NFM4 1077 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR9I1Q8NGQ6 314 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR10A6Q8NH74 314 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TAMM41Q96BW9 452 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TNKS2Q9H2K2 1166 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 NXF3Q9H4D5 531 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 RPS6KB2Q9UBS0 482 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms