RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SLC4A1P02730 911 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 C2P06681 752 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 CTSLP07711 333 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 GSTA1P08263 222 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 CRABP2P29373 138 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 PTPN5P54829 565 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 XIAPP98170 497 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 PEX6Q13608 980 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 ZNF234Q14588 700 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 ZKSCAN8Q15776 578 aaPredicted RBP14.09□□□□□ -0.15
SS18-201ENST00000269137 ZNF805Q5CZA5 627 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 ZNF789Q5FWF6 425 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 PPM1JQ5JR12 505 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 C9orf64Q5T6V5 341 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 CRTC1Q6UUV9 634 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 KYAT3Q6YP21 454 aaKnown RBP14.09□□□□□ -0.15
SS18-201ENST00000269137 RGS9BPQ6ZS82 235 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 CLEC14AQ86T13 490 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 TAX1BP1Q86VP1 789 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 LCA5Q86VQ0 697 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 SUGP1Q8IWZ8 645 aaKnown RBP14.09□□□□□ -0.15
SS18-201ENST00000269137 GDAP1Q8TB36 358 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 FAM111AQ96PZ2 611 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 MTG2Q9H4K7 406 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 BPIFA1Q9NP55 256 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.09□□□□□ -0.15
SS18-201ENST00000269137 ANKRD6Q9Y2G4 727 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 STARD13Q9Y3M8 1113 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 XIRP2A4UGR9 3374 aa14.09□□□□□ -0.15
SS18-201ENST00000269137 GRXCR2A6NFK2 248 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 H3BQ06 376 aaPredicted RBP14.08□□□□□ -0.15
SS18-201ENST00000269137 CLDN7O95471 211 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 PRNPP04156 253 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 APODP05090 189 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 SP100P23497 879 aaPredicted RBP14.08□□□□□ -0.15
SS18-201ENST00000269137 NFKBIAP25963 317 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 PMLP29590 882 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 MC4RP32245 332 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 SEC24CP53992 1094 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 SEMA3AQ14563 771 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 E2F5Q15329 346 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 PDK4Q16654 411 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 LDB1Q86U70 411 aaPredicted RBP14.08□□□□□ -0.15
SS18-201ENST00000269137 SFTPA1Q8IWL2 248 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 CHMP6Q96FZ7 201 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 OMDQ99983 421 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 PAIP2Q9BPZ3 127 aaKnown RBP14.08□□□□□ -0.15
SS18-201ENST00000269137 C12orf65Q9H3J6 166 aaKnown RBP14.08□□□□□ -0.15
SS18-201ENST00000269137 CAB39LQ9H9S4 337 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 VPS9D1Q9Y2B5 631 aa14.08□□□□□ -0.15
SS18-201ENST00000269137 A0A0U1RQS6 177 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 SOX1O00570 391 aaPredicted RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 COL6A2P12110 1019 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TIMP2P16035 220 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 STMN1P16949 149 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 HNRNPH2P55795 449 aaKnown RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 TAS2R39P59534 338 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 RAB10P61026 200 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 CACNG1Q06432 222 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 SMAD4Q13485 552 aaKnown RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 ELAVL3Q14576 367 aaKnown RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 ZSCAN26Q16670 478 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 AARS2Q5JTZ9 985 aaKnown RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 RNF187Q5TA31 235 aaPredicted RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 SERPINA13PQ6UXR4 307 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 CCDC91Q7Z6B0 441 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TSPAN33Q86UF1 283 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 SLC41A1Q8IVJ1 513 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 ZNF366Q8N895 744 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 GPATCH11Q8N954 259 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TMIEQ8NEW7 156 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 CSGALNACT1Q8TDX6 532 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TSPAN17Q96FV3 270 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 ELMO2Q96JJ3 720 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TRPV5Q9NQA5 729 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 APPL1Q9UKG1 709 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TLK1Q9UKI8 766 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 HCN2Q9UL51 889 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 VWA7Q9Y334 891 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 TCF20Q9UGU0 1960 aaKnown RBP14.08□□□□□ -0.16
SS18-201ENST00000269137 SCN8AQ9UQD0 1980 aa14.08□□□□□ -0.16
SS18-201ENST00000269137 UPK3BL1B0FP48 263 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 UPK3BL2E5RIL1 263 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 NPC1O15118 1278 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 PFDN6O15212 129 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 FAM107AO95990 144 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 SLC35E2BP0CK96 405 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 HNRNPLP14866 589 aaKnown RBP eCLIP14.07□□□□□ -0.163e-8■■■■□ 22.8
SS18-201ENST00000269137 TAC1P20366 129 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 SERPINB4P48594 390 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 TTPAP49638 278 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 MLLT1Q03111 559 aaPredicted RBP14.07□□□□□ -0.16
SS18-201ENST00000269137 TAF1BQ53T94 588 aaPredicted RBP14.07□□□□□ -0.16
SS18-201ENST00000269137 RBM20Q5T481 1227 aaKnown RBP14.07□□□□□ -0.16
SS18-201ENST00000269137 ZDHHC20Q5W0Z9 365 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 LRRC66Q68CR7 880 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 PIANPQ8IYJ0 282 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 OR8D1Q8WZ84 308 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 CCT8L2Q96SF2 557 aa14.07□□□□□ -0.16
SS18-201ENST00000269137 B4GALT6Q9UBX8 382 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms