RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 OLFM1Q99784 485 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 INTS7Q9NVH2 962 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 PCSK2P16519 638 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 OR10H1Q9Y4A9 318 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 PIPSLA2A3N6 862 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 RFXANKO14593 260 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 LINC00032P0C843 101 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 GSTM5P46439 218 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 RNASEH2BQ5TBB1 312 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 IQCKQ8N0W5 287 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 NAT16Q8N8M0 369 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 RTL3Q8N8U3 475 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 MIEF2Q96C03 454 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 PTGES3LE9PB15 166 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 LRIG2O94898 1065 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 NUP62P37198 522 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ARMC4Q5T2S8 1044 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TRIQKQ629K1 86 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 CHST9Q7L1S5 443 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TAC4Q86UU9 113 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 SPATA6LQ8N4H0 392 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 RBPJLQ9UBG7 517 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 IPO13O94829 963 aaKnown RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ATAT1Q5SQI0 421 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 CRELD2Q6UXH1 353 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 CLVS1Q8IUQ0 354 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 PHYKPLQ8IUZ5 450 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 PIGRP01833 764 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TSPAN8P19075 237 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 GPAT3Q53EU6 434 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 DRICH1Q6PGQ1 229 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 OFCC1Q8IZS5 231 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ZCCHC7Q8N3Z6 543 aaKnown RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ZBTB2Q8N680 514 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 OR6K2Q8NGY2 324 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 MAGEE2Q8TD90 523 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ZNF607Q96SK3 696 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 HOPXQ9BPY8 73 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TTYH3Q9C0H2 523 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 MIR1-1HGQ9H1L0 117 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TCAF1Q9Y4C2 921 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3DA0A087WVF3 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3IA0A087WXS9 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3EA0A087X179 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3KA0A087X1G2 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 GSAPA4D1B5 854 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3FA6NER0 549 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3LB9A6J9 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 SNAP91O60641 907 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 UGT2B4P06133 528 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3HP0C7X1 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3GQ6DHY5 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3CQ6IPX1 549 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 BNIPLQ7Z465 357 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 TBC1D3Q8IZP1 549 aaPredicted RBP18.95■□□□□ 0.62
PTPRE-201ENST00000254667 PPCDCQ96CD2 204 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 OR52E6Q96RD3 313 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 FAM192AQ9GZU8 254 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 CAB39LQ9H9S4 337 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 ZNF780BQ9Y6R6 833 aa18.95■□□□□ 0.62
PTPRE-201ENST00000254667 PER2O15055 1255 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 IL10RBQ08334 325 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 CRTC3Q6UUV7 619 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 DNAJC11Q9NVH1 559 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 CCL16O15467 120 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 RAB14P61106 215 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 HNRNPDQ14103 355 aaKnown RBP18.94■□□□□ 0.62
PTPRE-201ENST00000254667 UBAP2LQ14157 1087 aaKnown RBP18.94■□□□□ 0.62
PTPRE-201ENST00000254667 RFX4Q33E94 735 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 AAGABQ6PD74 315 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 MOSPD2Q8NHP6 518 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 RCN3Q96D15 328 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 SLC38A2Q96QD8 506 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 AIF1LQ9BQI0 150 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 DPEP3Q9H4B8 488 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 EVLQ9UI08 416 aaPredicted RBP18.94■□□□□ 0.62
PTPRE-201ENST00000254667 Q9Y3F1 56 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 PTPN2P17706 415 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 PDZK1Q5T2W1 519 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 NETO2Q8NC67 525 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 RTKNQ9BST9 563 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 TTLL2Q9BWV7 592 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 GSTK1Q9Y2Q3 226 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 DHDDSQ86SQ9 333 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 DSELQ8IZU8 1212 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 CYP4X1Q8N118 509 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 TFAP2BQ92481 460 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 CCDC28BQ9BUN5 200 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 C1orf50Q9BV19 199 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 APOBEC3GQ9HC16 384 aaKnown RBP18.94■□□□□ 0.62
PTPRE-201ENST00000254667 EIF2B3Q9NR50 452 aaKnown RBP18.94■□□□□ 0.62
PTPRE-201ENST00000254667 NUDT4Q9NZJ9 180 aa18.94■□□□□ 0.62
PTPRE-201ENST00000254667 FAM163BP0C2L3 166 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 SCIMPQ6UWF3 145 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 CCDC185Q8N715 623 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 POLR1BQ9H9Y6 1135 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 CLN6Q9NWW5 311 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 MAGEL2Q9UJ55 1249 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 NPEPPSL1A6NEC2 478 aa18.93■□□□□ 0.62
PTPRE-201ENST00000254667 H3BM21 787 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms