RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Clec4fP70194 548 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Hnrnph2P70333 449 aaKnown RBP11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 PamP97467 979 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Sh3gl2Q62420 352 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gpbp1l1Q6NZP2 473 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Sra1Q80VJ2 232 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Arl5aQ80ZU0 179 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Atl1Q8BH66 558 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Msantd1Q8BIL2 278 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Smoc2Q8CD91 447 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 PvrQ8K094 408 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Kremen2Q8K1S7 461 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 ApipQ9WVQ5 241 aa11.88□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Zc3h7aE9PWW6 970 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm10722F6VLK5 217 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Bmp1P98063 991 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 GaltQ03249 379 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Wbp4Q61048 376 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Ccdc117Q6PB51 277 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Ankzf1Q80UU1 748 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Q922R1 422 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Leng1Q9DB98 261 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Lima1Q9ERG0 753 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Dlc1Q9R0Z9 1092 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Vmn1r49Q9WUF1 310 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Spata31d1aE9QA35 1336 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm29394H3BIW7 199 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm8011K7N6Y5 207 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Dpysl2O08553 572 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 TpbpaP13438 124 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Spata48Q5NC83 441 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 RasefQ5RI75 627 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Foxd1Q61345 456 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Crtc1Q68ED7 630 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Slitrk2Q810C0 846 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Zfp595Q8BIN6 625 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Sh3rf2Q8BZT2 735 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 RhdQ8CF94 418 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Eif2b5Q8CHW4 717 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Atp6v1b1Q91YH6 513 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Ogfod2Q9CQ04 349 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Vsig1Q9D2J4 407 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Prorsd1Q9D820 169 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Mpp5Q9JLB2 675 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Polr3bP59470 1133 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 TCAIMQ66JZ4 499 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Krt72Q6IME9 520 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Zfp759Q7M6X3 721 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Tmem209Q8BRG8 561 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Cxxc5Q91WA4 317 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Scd3Q99PL7 359 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Trim33Q99PP7 1142 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Klhl32A2AJX0 620 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm12394A2AKP6 982 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm16494E9Q2Z4 87 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Fpr-rs3O88537 343 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 AprtP08030 180 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Il12bP43432 335 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Rhox5P52651 210 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Zc3hav1Q3UPF5 946 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm1587Q3UT80 123 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gpr142Q7TQN9 365 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Trim50Q810I2 483 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Noc4lQ8BHY2 516 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pabpc5Q8C7D3 381 aaKnown RBP11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Spata1Q9D5R4 444 aa11.87□□□□□ -0.51
Pcif1-201ENSMUST00000041643 SagP20443 403 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 S100gP97816 79 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pou1f1Q00286 291 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Stmnd1Q6P3A1 279 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Catsper4Q8BVN3 442 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pkn3Q8K045 878 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Traf3ip2Q8N7N6 555 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 NoboxQ8VIH1 527 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pdk3Q922H2 415 aaKnown RBP11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gins4Q99LZ3 223 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Ifrd2Q9D8U0 441 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Ecm29Q6PDI5 1840 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 CercamA3KGW5 592 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm2956E9PVJ0 216 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm8108K7N734 216 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gm3488M0QW81 238 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 TktP40142 623 aaKnown RBP11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Znf367Q0VDT2 340 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gpr15Q0VDU3 360 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Klhl5Q6PFE1 708 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Q8BGA7 448 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Arhgap25Q8BYW1 648 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 H2afy2Q8CCK0 372 aaKnown RBP11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pitrm1Q8K411 1036 aaKnown RBP11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Fam136aQ9CR98 138 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Rexo2Q9D8S4 237 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Fbxl12Q9EPX5 326 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Gde1Q9JL56 331 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Med20Q9R0X0 212 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Azin1O35484 448 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pknox1O70477 436 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Cct7P80313 544 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Pcnx4Q3UVY5 1174 aa11.86□□□□□ -0.51
Pcif1-201ENSMUST00000041643 Xylt1Q811B1 953 aa11.86□□□□□ -0.51
Retrieved 100 of 22,080 RNA–protein pairs in 32.2 ms