RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	BUD23	O43709	281 aa	Known RBP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	MT-ND3	P03897	115 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	EPHX1	P07099	455 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	ASGR2	P07307	311 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	CYP2A6	P11509	494 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	SRF	P11831	508 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	NR1D1	P20393	614 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	SUOX	P51687	545 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	ARSD	P51689	593 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	PTPN5	P54829	565 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	TMPRSS15	P98073	1019 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	PTPRCAP	Q14761	206 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	PON2	Q15165	354 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	PTPRR	Q15256	657 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	SDE2	Q6IQ49	451 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	TXNDC11	Q6PKC3	985 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	CRTC1	Q6UUV9	634 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	TIFAB	Q6ZNK6	161 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	LYSMD3	Q7Z3D4	306 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	GALNT7	Q86SF2	657 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	ARFGAP2	Q8N6H7	521 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	OR4L1	Q8NH43	312 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	PIP4K2C	Q8TBX8	421 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	MZB1	Q8WU39	189 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	SCG3	Q8WXD2	468 aa	Known RBP	11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	ACOX2	Q99424	681 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	FBXO5	Q9UKT4	447 aa		11.78	□□□□□ -0.52
CLN6-223	ENST00000637823	SZT2	Q5T011	3432 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823		A0A1W2PPM1	405 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	TRIM49D1	C9J1S8	452 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	GOLGA8T	H3BQL2	631 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823		H7C0S8	307 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	KPNA3	O00505	521 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	POLR3G	O15318	223 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CLDN7	O95471	211 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	GOT2	P00505	430 aa	Known RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	AHSG	P02765	367 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	XPA	P23025	273 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	ITGB7	P26010	798 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	NTSR1	P30989	418 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	VIPR1	P32241	457 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	TIE1	P35590	1138 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	POLD2	P49005	469 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	PPP2R2A	P63151	447 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CAMK2G	Q13555	558 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC44A4	Q53GD3	710 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM46C	Q5VWP2	391 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	FSTL4	Q6MZW2	842 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	MRNIP	Q6NTE8	343 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	AFTPH	Q6ULP2	937 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	KDM7A	Q6ZMT4	941 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	TRMT11	Q7Z4G4	463 aa	Known RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	PTAR1	Q7Z6K3	402 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	TTC7B	Q86TV6	843 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SRRM1	Q8IYB3	904 aa	Known RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CHPF	Q8IZ52	775 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CBARP	Q8N350	705 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	EZH1	Q92800	747 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	EID2B	Q96D98	161 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	PPP1R16A	Q96I34	528 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	TCF12	Q99081	682 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	RBBP8	Q99708	897 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	MCMBP	Q9BTE3	642 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SSU72	Q9NP77	194 aa	Known RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CATSPERZ	Q9NTU4	200 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	CACNA2D2	Q9NY47	1150 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC17A6	Q9P2U8	582 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	GGT7	Q9UJ14	662 aa		11.77	□□□□□ -0.53
CLN6-223	ENST00000637823	HMX2	A2RU54	273 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	FOXO6	A8MYZ6	492 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	C1QTNF3-AMACR	E9PGA6	284 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	CCL22	O00626	93 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	NARS	O43776	548 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SYNCRIP	O60506	623 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	RNASEH1	O60930	286 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	EGF	P01133	1207 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	ITGA2B	P08514	1039 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	CHRM1	P11229	460 aa	Predicted RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	IL9	P15248	144 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	ZNF30	P17039	623 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	HPD	P32754	393 aa	Predicted RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC1A2	P43004	574 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	LEPR	P48357	1165 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	LIMK2	P53671	638 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SEC13	P55735	322 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	MRPS21	P82921	87 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	PTS	Q03393	145 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	CTBP1	Q13363	440 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SMAD1	Q15797	465 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	FBXO43	Q4G163	708 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	FASTKD1	Q53R41	847 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	MROH9	Q5TGP6	573 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	ZNF470	Q6ECI4	717 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms