RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CST8O60676 142 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 HLA-DQB2P05538 268 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 HOXC4P09017 264 aaPredicted RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 CKMT1AP12532 417 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 CTPS1P17812 591 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 CDC25BP30305 580 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 ACADVLP49748 655 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 HK3P52790 923 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 SRP54P61011 504 aaKnown RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 COPS2P61201 443 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 IFI35P80217 286 aaPredicted RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 SLC10A2Q12908 348 aaPredicted RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 EIF2B5Q13144 721 aaKnown RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 PEX6Q13608 980 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 CNGA3Q16281 694 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 PROX2Q3B8N5 592 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 PNCKQ6P2M8 343 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 CCNI2Q6ZMN8 369 aaPredicted RBP14.16□□□□□ -0.14
LIG1-218ENST00000599322 SPOCD1Q6ZMY3 1216 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 NT5DC3Q86UY8 548 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 GAS2L3Q86XJ1 694 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 SYCE1Q8N0S2 351 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 FAM181AQ8N9Y4 354 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 SPC24Q8NBT2 197 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 EXD1Q8NHP7 514 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 APOLD1Q96LR9 279 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 TOR4AQ9NXH8 423 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 CHKBQ9Y259 395 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 PPIL1Q9Y3C6 166 aa14.16□□□□□ -0.14
LIG1-218ENST00000599322 DOCK9Q9BZ29 2069 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 CCDC66A2RUB6 948 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 C3orf70A6NLC5 250 aaPredicted RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 BTNL10A8MVZ5 291 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 LMO7DNF2Z398 122 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 TNFRSF10CO14798 259 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 DKK1O94907 266 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 CD86P42081 329 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 CDKN2BP42772 138 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 GPR1P46091 355 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 VAV2P52735 878 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 KIAA1024LP59773 190 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 C1orf61Q13536 156 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 NR0B2Q15466 257 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 SMAD1Q15797 465 aaKnown RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 DEFB133Q30KQ1 61 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 ALG1LQ6GMV1 187 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 RAET1GQ6H3X3 334 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 LVRNQ6Q4G3 990 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 LPCAT1Q8NF37 534 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 OR56A4Q8NGH8 313 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 TSACCQ96A04 125 aaPredicted RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 COQ10AQ96MF6 247 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 AGAP3Q96P47 875 aa14.15□□□□□ -0.14
LIG1-218ENST00000599322 MCCC1Q96RQ3 725 aaPredicted RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 SRPK1Q96SB4 655 aaKnown RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 MLPHQ9BV36 600 aaPredicted RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 TDRD1Q9BXT4 1180 aaKnown RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 CCDC86Q9H6F5 360 aaKnown RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 COL5A1P20908 1838 aaPredicted RBP14.15□□□□□ -0.14
LIG1-218ENST00000599322 A0A0J9YYE9 177 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 CPED1A4D0V7 1026 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 ZNF189O75820 626 aaPredicted RBP14.14□□□□□ -0.15
LIG1-218ENST00000599322 STK10O94804 968 aaKnown RBP14.14□□□□□ -0.15
LIG1-218ENST00000599322 TRBC1P01850 177 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 GP1BAP07359 652 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 FECHP22830 423 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 RWDD2BP57060 319 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 GSDMDP57764 484 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 NPNTQ6UXI9 565 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 RAVER1Q8IY67 606 aaKnown RBP14.14□□□□□ -0.15
LIG1-218ENST00000599322 NRSN1Q8IZ57 195 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 RBFAQ8N0V3 343 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 UBL4BQ8N7F7 174 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 PDCD7Q8N8D1 485 aaKnown RBP14.14□□□□□ -0.15
LIG1-218ENST00000599322 PIH1D2Q8WWB5 315 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 NAT6Q93015 286 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 LRRC45Q96CN5 670 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 HAUS1Q96CS2 278 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 AP2M1Q96CW1 435 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 DTD2Q96FN9 168 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 VAT1Q99536 393 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 SLC25A51Q9H1U9 297 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 RAD18Q9NS91 495 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 PKD2L2Q9NZM6 624 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 GULP1Q9UBP9 304 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 AMFRQ9UKV5 643 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 SHROOM3Q8TF72 1996 aa14.14□□□□□ -0.15
LIG1-218ENST00000599322 GOLGA6L9A6NEM1 432 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 CAPN8A6NHC0 703 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 NPIPB15A6NHN6 443 aaPredicted RBP14.13□□□□□ -0.15
LIG1-218ENST00000599322 HACD1B0YJ81 288 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 ANKRD66B4E2M5 251 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 H7C0C1 242 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 FZD6O60353 706 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 PDHA1P08559 390 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 MYCLP1P12525 358 aaPredicted RBP14.13□□□□□ -0.15
LIG1-218ENST00000599322 TRIM23P36406 574 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 ETV3P41162 512 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 ATP5OP48047 213 aa14.13□□□□□ -0.15
LIG1-218ENST00000599322 BIRC2Q13490 618 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms