RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PAF1Q8N7H5 531 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 ACTL9Q8TC94 416 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 HAUS1Q96CS2 278 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 NUS1Q96E22 293 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 AGAP3Q96P47 875 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 SMIM14Q96QK8 99 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 APOOQ9BUR5 198 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 HEMGNQ9BXL5 484 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 GLOD4Q9HC38 313 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 DNAJC28Q9NX36 388 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 FTSJ1Q9UET6 329 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 CSNK1G3Q9Y6M4 447 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 MYLKQ15746 1914 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 FRYQ5TBA9 3013 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 RP1P56715 2156 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 AKAP13Q12802 2813 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 H3BM21 787 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 KRT86O43790 486 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 FTCDO95954 541 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 PCCBP05166 539 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 C1SP09871 688 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ATXN1LP0C7T5 689 aaKnown RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 CTPS1P17812 591 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ACADVLP49748 655 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 STC1P52823 247 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 OTUD4Q01804 1114 aaKnown RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 QPCTQ16769 361 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 FAM182AQ5T1J6 154 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 AADACL2Q6P093 401 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ZNF765Q7L2R6 523 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ZC3H18Q86VM9 953 aaKnown RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 PHACTR4Q8IZ21 702 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 NDUFAF2Q8N183 169 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 HTR3CQ8WXA8 447 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 RBM15Q96T37 977 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 NLGN3Q9NZ94 848 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 ANGPTL2Q9UKU9 493 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 PACSIN2Q9UNF0 486 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 APOBEC2Q9Y235 224 aaKnown RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 PCDHGA1Q9Y5H4 931 aa16.14■□□□□ 0.17
TRIM28-213ENST00000598355 MAP1BP46821 2468 aaKnown RBP16.14■□□□□ 0.17
TRIM28-213ENST00000598355 FAM221BA6H8Z2 402 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 A8MX80 341 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ANKRD66B4E2M5 251 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 K7ESM1 405 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 TRIM38O00635 465 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ENC1O14682 589 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 SCAMP1O15126 338 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 SOD1P00441 154 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 TSHRP16473 764 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 JUNDP17535 347 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ETV3P41162 512 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 EPHB1P54762 984 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 PTSQ03393 145 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ZNF211Q13398 564 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ARHGEF7Q14155 803 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ACOX1Q15067 660 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ALG11Q2TAA5 492 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ZNF542PQ5EBM4 170 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 PNCKQ6P2M8 343 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 KDELC1Q6UW63 502 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 Q6ZVL8 140 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 NLRP8Q86W28 1048 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 RBFAQ8N0V3 343 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 ZNF567Q8N184 647 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 EID2Q8N6I1 236 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 UBL4BQ8N7F7 174 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 FAM181AQ8N9Y4 354 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 LPCAT1Q8NF37 534 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 BTN2A2Q8WVV5 523 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 FUBP1Q96AE4 644 aaKnown RBP16.13■□□□□ 0.17
TRIM28-213ENST00000598355 CNDP2Q96KP4 475 aaKnown RBP16.13■□□□□ 0.17
TRIM28-213ENST00000598355 LRRC61Q9BV99 259 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 TEX101Q9BY14 249 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 TCEAL2Q9H3H9 227 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-213ENST00000598355 SEPT10Q9P0V9 454 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 APOBEC3BQ9UH17 382 aaKnown RBP16.13■□□□□ 0.17
TRIM28-213ENST00000598355 OR1A2Q9Y585 309 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 DGKBQ9Y6T7 804 aa16.13■□□□□ 0.17
TRIM28-213ENST00000598355 LY6G6EA0A0G2JKS1 128 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 A0A0U1RQS6 177 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 AQP9O43315 295 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 TJP3O95049 919 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 LDOC1O95751 146 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 TOP3BO95985 862 aaKnown RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 MT-CYBP00156 380 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 CCDC175P0C221 793 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 MYCLP1P12525 358 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 NFKB1P19838 968 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 HTR1BP28222 390 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 HK3P52790 923 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 FOXC1Q12948 553 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 KCTD16Q68DU8 428 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 SPATA22Q8NHS9 363 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 WDR92Q96MX6 357 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 FCRL5Q96RD9 977 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 TMEM121BQ9BXQ6 578 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 ADGRE3Q9BY15 652 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 WDR26Q9H7D7 661 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms