RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 COL28A1Q2UY09 1125 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CDCP2Q5VXM1 449 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 RAET1GQ6H3X3 334 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 TAF8Q7Z7C8 310 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CCDC13Q8IYE1 715 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CACTIN-AS1Q8N1I8 211 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 PELI3Q8N2H9 469 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 ARL10Q8N8L6 244 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 KYQ8NBH2 561 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 TPCN2Q8NHX9 752 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 OR1E3Q8WZA6 343 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 SPOCK2Q92563 424 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 MAML1Q92585 1016 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 FAF2Q96CS3 445 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 SCRN2Q96FV2 425 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 RNF157Q96PX1 679 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CCDC3Q9BQI4 270 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 LGR4Q9BXB1 951 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 FGF22Q9HCT0 170 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 DTLQ9NZJ0 730 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CD84Q9UIB8 345 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 CHKBQ9Y259 395 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 HYOU1Q9Y4L1 999 aa12.71□□□□□ -0.37
NPLOC4-213ENST00000573519 LRRK1Q38SD2 2015 aa12.71□□□□□ -0.38
NPLOC4-213ENST00000573519 KCNK1O00180 336 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 PSMD11O00231 422 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 PDE2AO00408 941 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 APOL1O14791 398 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 SPOPO43791 374 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 BRINP1O60477 761 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 MPOP05164 745 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 MYCLP1P12525 358 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 CA4P22748 312 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 TRIM23P36406 574 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 NOP2P46087 812 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 DYNLT1P63172 113 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 AP1B1Q10567 949 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 LRRC66Q68CR7 880 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 LVRNQ6Q4G3 990 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 Q6ZVL8 140 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 HEATR4Q86WZ0 1026 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 RFX6Q8HWS3 928 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 LPCAT1Q8NF37 534 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 PIH1D2Q8WWB5 315 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 NAT6Q93015 286 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 RNF25Q96BH1 459 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 HDAC11Q96DB2 347 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 DTD2Q96FN9 168 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 TSGA13Q96PP4 275 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 SMIM14Q96QK8 99 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 RBM15Q96T37 977 aaKnown RBP eCLIP12.7□□□□□ -0.382e-6■□□□□ 9.1
NPLOC4-213ENST00000573519 LGMNQ99538 433 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 TMEM168Q9H0V1 697 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 CARS2Q9HA77 564 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 PHPT1Q9NRX4 125 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 KCTD5Q9NXV2 234 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 DGKBQ9Y6T7 804 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 FREM2Q5SZK8 3169 aa12.7□□□□□ -0.38
NPLOC4-213ENST00000573519 PRSS38A1L453 326 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 SOWAHDA6NJG2 315 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 B4DGG1 531 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 TNFRSF10CO14798 259 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 ZZEF1O43149 2961 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 TLX3O43711 291 aaPredicted RBP12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 FZD6O60353 706 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 MTA2O94776 668 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 JCHAINP01591 159 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 HOXC4P09017 264 aaPredicted RBP12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 CES1P23141 567 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 ACTN2P35609 894 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 GPR1P46091 355 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 GABREP78334 506 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 ISXQ2M1V0 245 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 FAM182AQ5T1J6 154 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 DOK6Q6PKX4 331 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 NPNTQ6UXI9 565 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 LRRC69Q6ZNQ3 347 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 RBM44Q6ZP01 1051 aaKnown RBP12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 RHOT1Q8IXI2 618 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 SDR16C5Q8N3Y7 309 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 PLD5Q8N7P1 536 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 FAM46DQ8NEK8 389 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 ARRDC2Q8TBH0 407 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 FATE1Q969F0 183 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 CCDC74AQ96AQ1 378 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 PANX2Q96RD6 677 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 MCCC1Q96RQ3 725 aaPredicted RBP12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 TDRD1Q9BXT4 1180 aaKnown RBP12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 CEP41Q9BYV8 373 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 DPEP2Q9H4A9 486 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 PCDH9Q9HC56 1237 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 SEPT10Q9P0V9 454 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 AMACRQ9UHK6 382 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 INTUQ9ULD6 942 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 PCDHA13Q9Y5I0 950 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 SHROOM3Q8TF72 1996 aa12.69□□□□□ -0.38
NPLOC4-213ENST00000573519 A0A0J9YYE9 177 aa12.68□□□□□ -0.38
NPLOC4-213ENST00000573519 C3orf70A6NLC5 250 aaPredicted RBP12.68□□□□□ -0.38
NPLOC4-213ENST00000573519 CASC3O15234 703 aaKnown RBP12.68□□□□□ -0.38
NPLOC4-213ENST00000573519 RRP8O43159 456 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms