RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SEMG2Q02383 582 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PPARDQ03181 441 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 GBE1Q04446 702 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ZNF211Q13398 564 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 ILKQ13418 452 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 MTM1Q13496 603 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 TFDP2Q14188 446 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 FZD2Q14332 565 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ACOX1Q15067 660 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 AGERQ15109 404 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PDK1Q15118 436 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 IRF4Q15306 451 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 C4orf48Q5BLP8 95 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ZNF542PQ5EBM4 170 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 MACC1Q6ZN28 852 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 USP45Q70EL2 814 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 SLCO6A1Q86UG4 719 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 BPHLQ86WA6 291 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 ZSWIM9Q86XI8 627 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CCDC50Q8IVM0 306 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 TEX26Q8N6G2 289 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PQLC3Q8N755 202 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ZNF548Q8NEK5 533 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 OR4C6Q8NH72 309 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 MAML1Q92585 1016 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 GLMNQ92990 594 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 FATE1Q969F0 183 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 VOPP1Q96AW1 172 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 CENPTQ96BT3 561 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 HDAC11Q96DB2 347 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ITPKCQ96DU7 683 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 TSGA13Q96PP4 275 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 SEMA3CQ99985 751 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 BRD8Q9H0E9 1235 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 ZFAND3Q9H8U3 227 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 USP29Q9HBJ7 922 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 MBNL1Q9NR56 388 aaKnown RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 GPR27Q9NS67 375 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 NLGN3Q9NZ94 848 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 NCKIPSDQ9NZQ3 722 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 B4GALT6Q9UBX8 382 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 APOBEC3BQ9UH17 382 aaKnown RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 DNPEPQ9ULA0 475 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 PHTF1Q9UMS5 762 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 DOLKQ9UPQ8 538 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 COQ6Q9Y2Z9 468 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 GPSM3Q9Y4H4 160 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 RAI2Q9Y5P3 530 aa8.13□□□□□ -1.11
VPS53-214ENST00000572607 EPN1Q9Y6I3 576 aaPredicted RBP8.13□□□□□ -1.11
VPS53-214ENST00000572607 ACACAQ13085 2346 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 CHD5Q8TDI0 1954 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 A0A0A6YYK5 440 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 SOWAHDA6NJG2 315 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 A8MX80 341 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PSMD11O00231 422 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PDE2AO00408 941 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 TRAFD1O14545 582 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 SCAMP1O15126 338 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 AQP9O43315 295 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 HTRA2O43464 458 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 SIGLEC6O43699 453 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 RECQL5O94762 991 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 NDUFA10O95299 355 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PGLSO95336 258 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 LCA5LO95447 670 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 CTSEP14091 401 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 ACADVLP49748 655 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 HADHBP55084 474 aaKnown RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 PPIDQ08752 370 aaKnown RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 AP1B1Q10567 949 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 TRAF2Q12933 501 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 RALGDSQ12967 914 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 DNAJC3Q13217 504 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 INPP5AQ14642 412 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 NFATC4Q14934 902 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 WSCD2Q2TBF2 565 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 FAXCQ5TGI0 409 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 DENND2CQ68D51 928 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 SLC9A4Q6AI14 798 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 C11orf63Q6NUN7 778 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 ENPP7Q6UWV6 458 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 DHRS13Q6UX07 377 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 LIPIQ6XZB0 460 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 TMPRSS7Q7RTY8 843 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 DAAM2Q86T65 1068 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 KIAA1328Q86T90 577 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PROSER1Q86XN7 944 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PHACTR4Q8IZ21 702 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 SLC25A45Q8N413 288 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 PGBD5Q8N414 524 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 FSTL5Q8N475 847 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS53-214ENST00000572607 TPCN2Q8NHX9 752 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 LMX1AQ8TE12 382 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 SCG3Q8WXD2 468 aaKnown RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 NUS1Q96E22 293 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 RBM41Q96IZ5 413 aaKnown RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 TBATAQ96M53 351 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 WDR92Q96MX6 357 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 IL12RB2Q99665 862 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms