RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TFR2Q9UP52 801 aa20.31■□□□□ 0.84
CLK3-225ENST00000569063 EPN1Q9Y6I3 576 aaPredicted RBP20.31■□□□□ 0.84
CLK3-225ENST00000569063 USP24Q9UPU5 2620 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 A0A0J9YYE9 177 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 TMEM202A6NGA9 273 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 OPA1O60313 960 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 PRLP01236 227 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 TNFP01375 233 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 TRBC1P01850 177 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 ALPIP09923 528 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 CA4P22748 312 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 KELP23276 732 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 ETV3P41162 512 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 CDKN2BP42772 138 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 RPL26P61254 145 aaKnown RBP20.3■□□□□ 0.84
CLK3-225ENST00000569063 NR0B2Q15466 257 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 C6orf132Q5T0Z8 1188 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 DENND2CQ68D51 928 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 MFSD7Q6UXD7 560 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 NYAP1Q6ZVC0 841 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 RD3Q7Z3Z2 195 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 TSPAN33Q86UF1 283 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 RFX6Q8HWS3 928 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 TMTC1Q8IUR5 882 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 PELI3Q8N2H9 469 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLK3-225ENST00000569063 CNTD1Q8N815 330 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 DCBLD1Q8N8Z6 715 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 OR56A4Q8NGH8 313 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 MDM1Q8TC05 714 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 GLMNQ92990 594 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 LGR4Q9BXB1 951 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 BRD8Q9H0E9 1235 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 WDR26Q9H7D7 661 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 RPL26L1Q9UNX3 145 aaKnown RBP20.3■□□□□ 0.84
CLK3-225ENST00000569063 CLCA2Q9UQC9 943 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 CHKBQ9Y259 395 aa20.3■□□□□ 0.84
CLK3-225ENST00000569063 EME2A4GXA9 379 aaPredicted RBP20.29■□□□□ 0.84
CLK3-225ENST00000569063 SOWAHDA6NJG2 315 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 PDE2AO00408 941 aaPredicted RBP20.29■□□□□ 0.84
CLK3-225ENST00000569063 PPP1R12AO14974 1030 aaPredicted RBP20.29■□□□□ 0.84
CLK3-225ENST00000569063 NDUFA10O95299 355 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 CELA2BP08218 269 aaPredicted RBP20.29■□□□□ 0.84
CLK3-225ENST00000569063 MMP2P08253 660 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 ZNF30P17039 623 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 TEAD1P28347 426 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 NR2C2P49116 596 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 RPIAP49247 311 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 EPHB1P54762 984 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 DPTQ07507 201 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 AP1B1Q10567 949 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 ZBTB17Q13105 803 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 TFDP2Q14188 446 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 CDKN3Q16667 212 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 CDCP2Q5VXM1 449 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 LRRC66Q68CR7 880 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 KCTD16Q68DU8 428 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 C11orf63Q6NUN7 778 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 CRTC1Q6UUV9 634 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 NPNTQ6UXI9 565 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 Q6ZVL8 140 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 TECPR1Q7Z6L1 1165 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 IFI44Q8TCB0 444 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 SCG3Q8WXD2 468 aaKnown RBP20.29■□□□□ 0.84
CLK3-225ENST00000569063 OR1E3Q8WZA6 343 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 PDXPQ96GD0 296 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 RBM15Q96T37 977 aaKnown RBP eCLIP20.29■□□□□ 0.848e-7■■■□□ 18.1
CLK3-225ENST00000569063 TEX101Q9BY14 249 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 PCDH9Q9HC56 1237 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 FGF22Q9HCT0 170 aa20.29■□□□□ 0.84
CLK3-225ENST00000569063 DMXL2Q8TDJ6 3036 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 LRP4O75096 1905 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 MYCLP1P12525 358 aaPredicted RBP20.28■□□□□ 0.84
CLK3-225ENST00000569063 PTSQ03393 145 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 GUSBP11Q6P575 273 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 BZW1Q7L1Q6 419 aaKnown RBP20.28■□□□□ 0.84
CLK3-225ENST00000569063 GKN2Q86XP6 184 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 SLC35F3Q8IY50 421 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 RAVER1Q8IY67 606 aaKnown RBP20.28■□□□□ 0.84
CLK3-225ENST00000569063 KATNAL2Q8IYT4 538 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 CALR3Q96L12 384 aaKnown RBP20.28■□□□□ 0.84
CLK3-225ENST00000569063 SMIM14Q96QK8 99 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 NRSN2Q9GZP1 204 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 GOLPH3Q9H4A6 298 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 DNPEPQ9ULA0 475 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 DOLKQ9UPQ8 538 aa20.28■□□□□ 0.84
CLK3-225ENST00000569063 A0A0U1RQS6 177 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 CAPN8A6NHC0 703 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 MT-CO3P00414 261 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 CD86P42081 329 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 DYNLT1P63172 113 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 SKOR1P84550 965 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 CYP4F3Q08477 520 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 SPOCD1Q6ZMY3 1216 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 EFL1Q7Z2Z2 1120 aaKnown RBP20.27■□□□□ 0.84
CLK3-225ENST00000569063 NLRP8Q86W28 1048 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 HEATR4Q86WZ0 1026 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 RCOR2Q8IZ40 523 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 LYSMD1Q96S90 227 aa20.27■□□□□ 0.84
CLK3-225ENST00000569063 ABCG4Q9H172 646 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms