RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC9A4Q6AI14 798 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 TIGD7Q6NT04 549 aaPredicted RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 CRTC1Q6UUV9 634 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 Q6ZVL8 140 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 MAP7D3Q8IWC1 876 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 CNTD1Q8N815 330 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 ARL10Q8N8L6 244 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 GPR156Q8NFN8 814 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 SNIP1Q8TAD8 396 aaKnown RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 MAPK15Q8TD08 544 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 PDCD6IPQ8WUM4 868 aaKnown RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 NSMCE1Q8WV22 266 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 HNRNPLLQ8WVV9 542 aaKnown RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 HDAC11Q96DB2 347 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 CCDC42Q96M95 316 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 POLR1EQ9GZS1 481 aaKnown RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 RBM22Q9NW64 420 aaKnown RBP eCLIP14.88□□□□□ -0.03
CLN3-213ENST00000565047 PADI4Q9UM07 663 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 SHROOM3Q8TF72 1996 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 A0A0J9YYE9 177 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 CACNB4O00305 520 aaPredicted RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 CSO75390 466 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 DXOO77932 396 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 TNFP01375 233 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 TRBC1P01850 177 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 HLA-DQB2P05538 268 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 CEACAM5P06731 702 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ALPIP09923 528 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 CCNB1P14635 433 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 DPTQ07507 201 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 PPIDQ08752 370 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 ACOX1Q15067 660 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 TAZQ16635 292 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ISXQ2M1V0 245 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 LRRC38Q5VT99 294 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 RD3Q7Z3Z2 195 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 NLRP8Q86W28 1048 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 SFTPA2Q8IWL1 248 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 RHOT2Q8IXI1 618 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 TC2NQ8N9U0 490 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 KYQ8NBH2 561 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ATL2Q8NHH9 583 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 CCL4L1Q8NHW4 92 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 TPCN2Q8NHX9 752 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 PTCD2Q8WV60 388 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 NUS1Q96E22 293 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 PRR11Q96HE9 360 aaPredicted RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 HIC2Q96JB3 615 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 DEPDC7Q96QD5 511 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 LGMNQ99538 433 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 TDRD1Q9BXT4 1180 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 FRMD8Q9BZ67 464 aaPredicted RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 TMEM168Q9H0V1 697 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 DEF6Q9H4E7 631 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 EVA1BQ9NVM1 165 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ZNHIT6Q9NWK9 470 aaKnown RBP14.87□□□□□ -0.03
CLN3-213ENST00000565047 KCTD5Q9NXV2 234 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 INTUQ9ULD6 942 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ENTPD2Q9Y5L3 495 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 ST14Q9Y5Y6 855 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 AK5Q9Y6K8 562 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 RP1P56715 2156 aa14.87□□□□□ -0.03
CLN3-213ENST00000565047 AKR1B15C9JRZ8 316 aaPredicted RBP14.86□□□□□ -0.03
CLN3-213ENST00000565047 NOBOXO60393 691 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 TCEA3O75764 348 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 LCA5LO95447 670 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 MYCLP1P12525 358 aaPredicted RBP14.86□□□□□ -0.03
CLN3-213ENST00000565047 CTPS1P17812 591 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 CES1P23141 567 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 LSSP48449 732 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 RPIAP49247 311 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 ZBTB17Q13105 803 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 TBC1D25Q3MII6 688 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 FAM182AQ5T1J6 154 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 IGF2-ASQ6U949 168 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 C17orf82Q86X59 251 aaPredicted RBP14.86□□□□□ -0.03
CLN3-213ENST00000565047 GKN2Q86XP6 184 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 NRROSQ86YC3 692 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 CNGA4Q8IV77 575 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 GPBAR1Q8TDU6 330 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 FGF11Q92914 225 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 GLMNQ92990 594 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 NAT6Q93015 286 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 SCARF2Q96GP6 870 aaPredicted RBP14.86□□□□□ -0.03
CLN3-213ENST00000565047 OLFM3Q96PB7 478 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 LYSMD1Q96S90 227 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 CCDC3Q9BQI4 270 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 ABCG4Q9H172 646 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 WDR26Q9H7D7 661 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 SLC17A4Q9Y2C5 497 aa14.86□□□□□ -0.03
CLN3-213ENST00000565047 A0A1W2PQM1 296 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 PRSS38A1L453 326 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 USP12O75317 370 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 CYP2A6P11509 494 aaPredicted RBP14.85□□□□□ -0.03
CLN3-213ENST00000565047 CTSEP14091 401 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 MX2P20592 715 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 KELP23276 732 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 ITPKBP27987 946 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 STC1P52823 247 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 HADHBP55084 474 aaKnown RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms