RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ACOX1Q15067 660 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 CDO1Q16878 200 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 CRTC2Q53ET0 693 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 C2CD6Q53TS8 623 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TTI2Q6NXR4 508 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 PNCKQ6P2M8 343 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TRIM65Q6PJ69 517 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 BRAT1Q6PJG6 821 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 MAMDC2Q7Z304 686 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 NLRP14Q86W24 1093 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ZNF761Q86XN6 746 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 DNAAF5Q86Y56 855 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 NRROSQ86YC3 692 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 CAMK1DQ8IU85 385 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SRRM1Q8IYB3 904 aaKnown RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 NAGSQ8N159 534 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ESX1Q8N693 406 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 BMPERQ8N8U9 685 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TMEM35BQ8NCS4 154 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 OR10G6Q8NH81 332 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 HCAR2Q8TDS4 363 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 NELFBQ8WX92 580 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SHC3Q92529 594 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TBC1D31Q96DN5 1066 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ZNF641Q96N77 438 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SLC38A3Q99624 504 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ZPBPQ9BS86 351 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SPRY4Q9C004 299 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SCAND2PQ9GZW5 306 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 RETREG1Q9H6L5 497 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 PHPT1Q9NRX4 125 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TRNAU1APQ9NX07 287 aaKnown RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TLK1Q9UKI8 766 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 POLHQ9Y253 713 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 RPS6KL1Q9Y6S9 549 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 CNTRLQ7Z7A1 2325 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SEC16AO15027 2179 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 BICDL2A1A5D9 508 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 TSPAN11A1L157 253 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CDC14CA4D256 554 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CFAP69A5D8W1 941 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GOLGA6CA6NDK9 693 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GOLGA6BA6NDN3 693 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 A8MX80 341 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 FAM72CH0Y354 149 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 POLR1CO15160 346 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 INPP4BO15327 924 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 BUB1BO60566 1050 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 PLEKP08567 350 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GOLGA6DP0CG33 693 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MYCLP1P12525 358 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CD44P16070 742 aaKnown RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 BMP6P22004 513 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 ELAVL4P26378 380 aaKnown RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 ERCC5P28715 1186 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 TNFRSF8P28908 595 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CLCN1P35523 988 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 DLSTP36957 453 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 PPP1R2P41236 205 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 ACTR1BP42025 376 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 STAT5AP42229 794 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GABRB2P47870 512 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MARSP56192 900 aaKnown RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 STX17P56962 302 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 RIPPLY3P57055 190 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 BPIFB4P59827 614 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 ACTR1AP61163 376 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GPLD1P80108 840 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CTBSQ01459 385 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 NRG1Q02297 640 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 SQSTM1Q13501 440 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CYTH1Q15438 398 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 EIF2S3LQ2VIR3 472 aaKnown RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 RAB6CQ53S08 254 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 FAM72AQ5TYM5 149 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MANEALQ5VSG8 457 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 FAM72DQ6L9T8 149 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 TRNP1Q6NT89 227 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 LIPIQ6XZB0 460 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GBP6Q6ZN66 633 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 SLC47A2Q86VL8 602 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 FAM72BQ86X60 149 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 XYLT1Q86Y38 959 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 HSCBQ8IWL3 235 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 PELI3Q8N2H9 469 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 EMC1Q8N766 993 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MSANTD4Q8NCY6 345 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 PRR7Q8TB68 274 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 NCSTNQ92542 709 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 RNF31Q96EP0 1072 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MAGEB5Q9BZ81 275 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 KLC2Q9H0B6 622 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 RAB6CQ9H0N0 254 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 APMAPQ9HDC9 416 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 FBXO8Q9NRD0 319 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 GOLGA6AQ9NYA3 693 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 MAP10Q9P2G4 905 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 LHX3Q9UBR4 397 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 UBA2Q9UBT2 640 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 APEX2Q9UBZ4 518 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms