RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SLC39A8Q9C0K1 460 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 RPF2Q9H7B2 306 aaKnown RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 GID8Q9NWU2 228 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 NOL3O60936 208 aaKnown RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 SLC4A1P02730 911 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 MMP3P08254 477 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 CHRM3P20309 590 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 IREB2P48200 963 aaKnown RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 NEDD8Q15843 81 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 ATP6AP1Q15904 470 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 CCDC117Q8IWD4 279 aaPredicted RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 MAGEE2Q8TD90 523 aaPredicted RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 ADAMTS16Q8TE57 1224 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 SENP8Q96LD8 212 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 MID1IP1Q9NPA3 183 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 CMTM6Q9NX76 183 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 ACTR3BQ9P1U1 418 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 IPPQ9Y573 584 aa13.99□□□□□ -0.17
VPS9D1-202ENST00000561976 POLR2AP24928 1970 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 RRN3P2A6NIE6 340 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ADM5C9JUS6 153 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 GABRDO14764 452 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ARPC2O15144 300 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 MTHFD1P11586 935 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TTKP33981 857 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 LEPRP48357 1165 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CCT8P50990 548 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 WNT3AP56704 352 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CDC42EP1Q00587 391 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ITKQ08881 620 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 SFSWAPQ12872 951 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 GRB7Q14451 532 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 UNC50Q53HI1 259 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TMTC4Q5T4D3 741 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 XKR5Q6UX68 686 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 RANBP10Q6VN20 620 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 KCTD8Q6ZWB6 473 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 OR6J1Q8NGC5 347 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 OR52K2Q8NGK3 314 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TMEM40Q8WWA1 233 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 DNAJB3Q8WWF6 145 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 BORCS5Q969J3 196 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TUBGCP3Q96CW5 907 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 UBXN10Q96LJ8 280 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ZFP42Q96MM3 310 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ABCD2Q9UBJ2 740 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 DNAJC15Q9Y5T4 150 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CCL22O00626 93 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CXCL11O14625 94 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 PIP5K1BO14986 540 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 HSD17B1P14061 328 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 YAP1P46937 504 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 PSMD7P51665 324 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 MAPK10P53779 464 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 C21orf59P57076 290 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 SH3BP2P78314 561 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CBX3Q13185 183 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 FGD3Q5JSP0 725 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 RAB41Q5JT25 222 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 AARS2Q5JTZ9 985 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 LCN8Q6JVE9 175 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 MOB2Q70IA6 237 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ZBTB46Q86UZ6 589 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 PIM3Q86V86 326 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 RNF168Q8IYW5 571 aaPredicted RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ADGRG5Q8IZF4 528 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 MINDY1Q8N5J2 469 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TRPV3Q8NET8 790 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 ZNF420Q8TAQ5 688 aaPredicted RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 EMID1Q96A84 441 aaPredicted RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 MYRFLQ96LU7 910 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 SOX17Q9H6I2 414 aaPredicted RBP13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 CDH7Q9ULB5 785 aa13.98□□□□□ -0.17
VPS9D1-202ENST00000561976 PPP6CO00743 305 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CBFA2T3O75081 653 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 RASAL1O95294 804 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 AXLP30530 894 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CDKN2DP55273 166 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 YBX1P67809 324 aaKnown RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 PLCL1Q15111 1095 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 C16orf87Q6PH81 154 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CHST15Q7LFX5 561 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 ISCA2Q86U28 154 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 PTGR2Q8N8N7 351 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 DDHD1Q8NEL9 900 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 DNAJB14Q8TBM8 379 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 DQX1Q8TE96 717 aaKnown RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 TWIST2Q8WVJ9 160 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 LRRC58Q96CX6 371 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 L3HYPDHQ96EM0 354 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 RPL10LQ96L21 214 aaKnown RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 PPP1R2P1Q96PQ5 205 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 NAA50Q9GZZ1 169 aaKnown RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CD320Q9NPF0 282 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 NDFIP2Q9NV92 336 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 SMPD3Q9NY59 655 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 PKD2L2Q9NZM6 624 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CRYL1Q9Y2S2 319 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms