RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ERVPABLB-1P60509 514 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 CXADRP78310 365 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 DPYSL3Q14195 570 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 ARMC12Q5T9G4 340 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 Q6ZVL8 140 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 B3GNT8Q7Z7M8 397 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 CBARPQ8N350 705 aaPredicted RBP10.23□□□□□ -0.77
LDLR-214ENST00000560628 GPR156Q8NFN8 814 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 IQCDQ96DY2 449 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 NUS1Q96E22 293 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 SCRN2Q96FV2 425 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 PRR11Q96HE9 360 aaPredicted RBP10.23□□□□□ -0.77
LDLR-214ENST00000560628 SLC46A1Q96NT5 459 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 SEMA3CQ99985 751 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 PACSIN1Q9BY11 444 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 FOXP3Q9BZS1 431 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 DPEP2Q9H4A9 486 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 THSD1Q9NS62 852 aa10.23□□□□□ -0.77
LDLR-214ENST00000560628 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.23□□□□□ -0.772e-7■■□□□ 13.2
LDLR-214ENST00000560628 LAMA5O15230 3695 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 A0A1W2PQM1 296 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PRSS38A1L453 326 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 B4DGG1 531 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PDE2AO00408 941 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 NOBOXO60393 691 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PROSCO94903 275 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PRB1P04280 392 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 CYP2A6P11509 494 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 GARSP41250 739 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 POLD2P49005 469 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PDX1P52945 283 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 DSC2Q02487 901 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 GALNT2Q10471 571 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 ARHGEF7Q14155 803 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 IHHQ14623 411 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 ZSCAN23Q3MJ62 389 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 ANKRD20A8PQ5CZ79 823 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 FAM182AQ5T1J6 154 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 ZFYVE27Q5T4F4 411 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 NCBP2-AS2Q69YL0 99 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 OGFOD3Q6PK18 319 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 GPR155Q7Z3F1 870 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 HEATR4Q86WZ0 1026 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 LRRC49Q8IUZ0 686 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 CCNJLQ8IV13 435 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 TEX26Q8N6G2 289 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 WDR36Q8NI36 951 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 WDR48Q8TAF3 677 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 FAM71BQ8TC56 605 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PTCD2Q8WV60 388 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 PIH1D2Q8WWB5 315 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 KCNE4Q8WWG9 221 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 GRAMD1AQ96CP6 724 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 DTD2Q96FN9 168 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 GFM1Q96RP9 751 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 UBL7Q96S82 380 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 TEX101Q9BY14 249 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 LRRN3Q9H3W5 708 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 CARS2Q9HA77 564 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 CPNE5Q9HCH3 593 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 EPB41L5Q9HCM4 733 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 PHPT1Q9NRX4 125 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 SPATS2LQ9NUQ6 558 aaKnown RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 RBM22Q9NW64 420 aaKnown RBP eCLIP10.22□□□□□ -0.77
LDLR-214ENST00000560628 WDR70Q9NW82 654 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 RCOR3Q9P2K3 495 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 CD84Q9UIB8 345 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 ATXN7L1Q9ULK2 861 aaPredicted RBP10.22□□□□□ -0.77
LDLR-214ENST00000560628 NENFQ9UMX5 172 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 CHKBQ9Y259 395 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 TTLL3Q9Y4R7 772 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 RNF215Q9Y6U7 377 aa10.22□□□□□ -0.77
LDLR-214ENST00000560628 CCDC187A0A096LP49 1063 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 MATN3O15232 486 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 CEACAM5P06731 702 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 H2AFZP0C0S5 128 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 MYCLP1P12525 358 aaPredicted RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 HGFP14210 728 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 NFKBIAP25963 317 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 AK4P27144 223 aaPredicted RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 HNRNPH3P31942 346 aaKnown RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 GPR1P46091 355 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 GNPDA1P46926 289 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 EPHB1P54762 984 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 INHBCP55103 352 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 CDK3Q00526 305 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 GBE1Q04446 702 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 SLC10A2Q12908 348 aaPredicted RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 MESDQ14696 234 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 PAFAH1B3Q15102 231 aaKnown RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 PDK2Q15119 407 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 IFI16Q16666 785 aaKnown RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 C14orf28Q4W4Y0 310 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 RALGPS1Q5JS13 557 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 ARHGAP40Q5TG30 622 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 BROXQ5VW32 411 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 SPECC1LQ69YQ0 1117 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 RAET1GQ6H3X3 334 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 DOK6Q6PKX4 331 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 USP45Q70EL2 814 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms