RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 LRRK1Q38SD2 2015 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 LDB2O43679 373 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 TM7SF2O76062 418 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 RECQL5O94762 991 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 MGAT1P26572 445 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 ETV3P41162 512 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 DHPSP49366 369 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 SESN2P58004 480 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 CRADDP78560 199 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 CDK16Q00536 496 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 CDH17Q12864 832 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 ARHGEF7Q14155 803 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 ACOX1Q15067 660 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 CCDC38Q502W7 563 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 FNBP1LQ5T0N5 605 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 LRRC8BQ6P9F7 803 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 ZDHHC24Q6UX98 284 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 PRR23BQ6ZRT6 265 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 PELI3Q8N2H9 469 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 MPP5Q8N3R9 675 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 DNAAF3Q8N9W5 541 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 SNX19Q92543 992 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 SERPINB12Q96P63 405 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 KLF6Q99612 283 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 MYOCQ99972 504 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 GPR63Q9BZJ6 419 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 PCED1AQ9H1Q7 454 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 BPIFA1Q9NP55 256 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 MBNL1Q9NR56 388 aaKnown RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 RAPGEFL1Q9UHV5 662 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 EIF2B4Q9UI10 523 aaKnown RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 CD84Q9UIB8 345 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 ANAPC5Q9UJX4 755 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 UTP11Q9Y3A2 253 aaKnown RBP12.82□□□□□ -0.36
SHMT2-227ENST00000557269 DOCK9Q9BZ29 2069 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 MYLKQ15746 1914 aa12.82□□□□□ -0.36
SHMT2-227ENST00000557269 FANCMQ8IYD8 2048 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 CCDC78A2IDD5 438 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 MEI4A8MW99 385 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 LZTS3O60299 673 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 BANF1O75531 89 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 RHOXF2BP0C7M4 288 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 ZNF30P17039 623 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 ITPKAP23677 461 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 NFKBIAP25963 317 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 MAGEA3P43357 314 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 GUCY2DQ02846 1103 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 CREB5Q02930 508 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 MORF4L2Q15014 288 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 TAF1AQ15573 450 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 WSCD2Q2TBF2 565 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 MSS51Q4VC12 460 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 GLT6D1Q7Z4J2 308 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 PCGF5Q86SE9 256 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 C11orf74Q86VG3 221 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 HOOK3Q86VS8 718 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 TP53I13Q8NBR0 393 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 C1orf216Q8TAB5 229 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 BRSK1Q8TDC3 778 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 SEC14L1Q92503 715 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 ATOH1Q92858 354 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 SCAMP4Q969E2 229 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 CENPTQ96BT3 561 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 RHOXF2Q9BQY4 288 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 TRIM56Q9BRZ2 755 aaKnown RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 RAB17Q9H0T7 212 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 EPC1Q9H2F5 836 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 EPB41L5Q9HCM4 733 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 TMEM74BQ9NUR3 256 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 SYBUQ9NX95 663 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 HACD3Q9P035 362 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 WHRNQ9P202 907 aa12.81□□□□□ -0.36
SHMT2-227ENST00000557269 ATXN2Q99700 1313 aaKnown RBP12.81□□□□□ -0.36
SHMT2-227ENST00000557269 CEP192Q8TEP8 1941 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 THADAQ6YHU6 1953 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 A0A1W2PPC4 97 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 MROH6A6NGR9 719 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 K7ESM1 405 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 PSMD11O00231 422 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 CCL22O00626 93 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 RHOBTB1O94844 696 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 BPIP17213 487 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 CD27P26842 260 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 HMGCLP35914 325 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 NPY2RP49146 381 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SPINT3P49223 89 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 ZNF140P52738 457 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 PTPN5P54829 565 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 DRG2P55039 364 aaKnown RBP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 CLDN2P57739 230 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SGCGQ13326 291 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SEPT6Q14141 434 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 GLE1Q53GS7 698 aaKnown RBP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SETMARQ53H47 684 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SPDYCQ5MJ68 293 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 LYSMD4Q5XG99 296 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 PLA2G15Q8NCC3 412 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 GPR26Q8NDV2 337 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 OR4K2Q8NGD2 314 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 OR13C4Q8NGS5 318 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms