RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CLPBQ9H078 707 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 CAAP1Q9H8G2 361 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 PCDHA13Q9Y5I0 950 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 ZFHX4Q86UP3 3567 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 CHD6Q8TD26 2715 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 TRABD2BA6NFA1 517 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 CAPN8A6NHC0 703 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 BTNL10A8MVZ5 291 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 SPOPO43791 374 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 OPA1O60313 960 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 MAP3K6O95382 1288 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 PRLP01236 227 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 ANXA6P08133 673 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 PDHA1P08559 390 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 MYCLP1P12525 358 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 DSC2Q02487 901 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 ARHGEF7Q14155 803 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 TFDP2Q14188 446 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 RTP5Q14D33 572 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 ACOX1Q15067 660 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 NR0B2Q15466 257 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 ENPP7Q6UWV6 458 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 BZW1Q7L1Q6 419 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 TECPR1Q7Z6L1 1165 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 TMTC1Q8IUR5 882 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 KATNAL2Q8IYT4 538 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 CCNYQ8ND76 341 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 WDR48Q8TAF3 677 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 TADA1Q96BN2 335 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 GRAMD1AQ96CP6 724 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 NXPE2Q96DL1 559 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 LGMNQ99538 433 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 MAK16Q9BXY0 300 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 CLCA2Q9UQC9 943 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 ALG6Q9Y672 507 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 APC2O95996 2303 aa16.05■□□□□ 0.16
CCDC88C-209ENST00000554872 DSPP15924 2871 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 FAM149AA5PLN7 773 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 TAF4O00268 1085 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 YY2O15391 372 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 NDUFA10O95299 355 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 PYGLP06737 847 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 MMP2P08253 660 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 ITKQ08881 620 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 NIPAL4Q0D2K0 466 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 TARDBPQ13148 414 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 PRKD1Q15139 912 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 DEFB133Q30KQ1 61 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 ODF2Q5BJF6 829 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 MFSD7Q6UXD7 560 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 HSD11B1LQ7Z5J1 315 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 GKN2Q86XP6 184 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 HID1Q8IV36 788 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 SLC35F3Q8IY50 421 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 NRSN1Q8IZ57 195 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 CNTD1Q8N815 330 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 ARL10Q8N8L6 244 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 IFI44Q8TCB0 444 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 SCG3Q8WXD2 468 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 TSACCQ96A04 125 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 PDXPQ96GD0 296 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 PCDH9Q9HC56 1237 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 FGF22Q9HCT0 170 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 PHPT1Q9NRX4 125 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 HEY1Q9Y5J3 304 aa16.04■□□□□ 0.16
CCDC88C-209ENST00000554872 TMEM202A6NGA9 273 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 KCNK1O00180 336 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 TNFP01375 233 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 CTSEP14091 401 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 TGM2P21980 687 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 ETV3P41162 512 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 NOP2P46087 812 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 STC1P52823 247 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 SKOR1P84550 965 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 ZBTB17Q13105 803 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 PPP2R5EQ16537 467 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 TFDP3Q5H9I0 405 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 LRRC66Q68CR7 880 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 CRTC1Q6UUV9 634 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 ADAMTSL4Q6UY14 1074 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 TSPAN33Q86UF1 283 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 PELI3Q8N2H9 469 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 OR6C4Q8NGE1 309 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 OR1E3Q8WZA6 343 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 IMP4Q96G21 291 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 SCARF2Q96GP6 870 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 FRMD8Q9BZ67 464 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 EPN1Q9Y6I3 576 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 ACACAQ13085 2346 aa16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 COL27A1Q8IZC6 1860 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-209ENST00000554872 PRSS38A1L453 326 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 RGSL1A5PLK6 1076 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 A8MX80 341 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 MTSS1O43312 755 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 TCEA3O75764 348 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 KRT37O76014 449 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 IPO7O95373 1038 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 MT-CO3P00414 261 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 SOD1P00441 154 aa16.02■□□□□ 0.16
CCDC88C-209ENST00000554872 JCHAINP01591 159 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms