RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	WNT9A	O14904	365 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	AURKA	O14965	403 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	SPINT1	O43278	529 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	RECQL5	O94762	991 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	RHOBTB1	O94844	696 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	MLN	P12872	115 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	LPO	P22079	712 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	LHCGR	P22888	699 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	ADRA1D	P25100	572 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	ETV3	P41162	512 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	CCR5	P51681	352 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	DRG2	P55039	364 aa	Known RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	TMPRSS15	P98073	1019 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	PDE1B	Q01064	536 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	PTS	Q03393	145 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	TAF1A	Q15573	450 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	CCDC38	Q502W7	563 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	SETMAR	Q53H47	684 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	PCID2	Q5JVF3	399 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZC3H14	Q6PJT7	736 aa	Known RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545		Q6ZVL8	140 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	HSD11B1L	Q7Z5J1	315 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	CAND1	Q86VP6	1230 aa	Known RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	RGL4	Q8IZJ4	473 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	CADM4	Q8NFZ8	388 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	HSPA12B	Q96MM6	686 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	PWWP2A	Q96N64	755 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	MYOC	Q99972	504 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	SLC17A9	Q9BYT1	436 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	IL22	Q9GZX6	179 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	MIR1-1HG	Q9H1L0	117 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	PCED1A	Q9H1Q7	454 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	RAD18	Q9NS91	495 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	GRHL1	Q9NZI5	618 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	CD84	Q9UIB8	345 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	RAB23	Q9ULC3	237 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZFR2	Q9UPR6	939 aa	Known RBP	10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	ARL5A	Q9Y689	179 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545		R4GN57	208 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	HEATR9	A2RTY3	570 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	PSMD11	O00231	422 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	C1S	P09871	688 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	AKT2	P31751	481 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	STC1	P52823	247 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	CRADD	P78560	199 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	LPAL2	Q16609	132 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	HIF1A	Q16665	826 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	CDKN3	Q16667	212 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	SKIDA1	Q1XH10	827 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZNF284	Q2VY69	593 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	PLK5	Q496M5	336 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	WDR45B	Q5MNZ6	344 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	FNBP1L	Q5T0N5	605 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	LYSMD4	Q5XG99	296 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ALS2CL	Q60I27	953 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	RFLNA	Q6ZTI6	216 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	CENPU	Q71F23	418 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZNF534	Q76KX8	674 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	NLRP9	Q7RTR0	991 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	TMC3	Q7Z5M5	1100 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	CCDC25	Q86WR0	208 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	TRIM69	Q86WT6	500 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	TTC30B	Q8N4P2	665 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZBTB44	Q8NCP5	570 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	OR4K2	Q8NGD2	314 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	NELL1	Q92832	810 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ATOH1	Q92858	354 aa	Predicted RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ART4	Q93070	314 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	BIRC7	Q96CA5	298 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	NUS1	Q96E22	293 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	SERAC1	Q96JX3	654 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	C1QTNF2	Q9BXJ5	285 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	FAM83D	Q9H4H8	585 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	SYBU	Q9NX95	663 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	MTRF1L	Q9UGC7	380 aa	Known RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	KCTD3	Q9Y597	815 aa		10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545		V9GYY5	206 aa	Predicted RBP	10.15	□□□□□ -0.78
CPSF7-221	ENST00000543545	MUC22	E2RYF6	1773 aa	Predicted RBP	10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	SHROOM3	Q8TF72	1996 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	MAGEB16	A2A368	324 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	RGSL1	A5PLK6	1076 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	PCCB	P05166	539 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	IGHV4-34	P06331	123 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	HNRNPA2B1	P22626	353 aa	Known RBP	10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	CD27	P26842	260 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	MAOB	P27338	520 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	HMGCL	P35914	325 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	NUDT1	P36639	197 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	PTGER3	P43115	390 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	SPINT3	P49223	89 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	DHX9	Q08211	1270 aa	Known RBP	10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	PDIA2	Q13087	525 aa	Known RBP	10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	MSLN	Q13421	630 aa	Predicted RBP	10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	CUL1	Q13616	776 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	PTPRCAP	Q14761	206 aa		10.14	□□□□□ -0.79
CPSF7-221	ENST00000543545	STAT4	Q14765	748 aa		10.14	□□□□□ -0.79

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