RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 STXBP4Q6ZWJ1 553 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 GAREM2Q75VX8 874 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 TMTC1Q8IUR5 882 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 EPHX4Q8IUS5 362 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 SLC41A1Q8IVJ1 513 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 ZNF34Q8IZ26 560 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 ZDHHC14Q8IZN3 488 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 KIF2BQ8N4N8 673 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 MARVELD2Q8N4S9 558 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 TBC1D19Q8N5T2 526 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 NIPA2Q8N8Q9 360 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 C12orf29Q8N999 325 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 ASCC1Q8N9N2 400 aaKnown RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 TTC29Q8NA56 475 aaPredicted RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 RBM15BQ8NDT2 890 aaKnown RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 IL17RDQ8NFM7 739 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 TBC1D16Q8TBP0 767 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 FAM216AQ8WUB2 273 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 UCMAQ8WVF2 138 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 KBTBD7Q8WVZ9 684 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 ASZ1Q8WWH4 475 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 SLC13A3Q8WWT9 602 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 RIN2Q8WYP3 895 aaPredicted RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 SLC22A18Q96BI1 424 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 PTERQ96BW5 349 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 AJUBAQ96IF1 538 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 APOPT1Q96IL0 206 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 DYDC2Q96IM9 177 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 PLEKHA8Q96JA3 519 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 VPS39Q96JC1 886 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 LCORQ96JN0 433 aaPredicted RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 BARD1Q99728 777 aaKnown RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 FDXACB1Q9BRP7 624 aaPredicted RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 ADPGKQ9BRR6 497 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 KIFC1Q9BW19 673 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 PINK1Q9BXM7 581 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 HAPLN2Q9GZV7 340 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.54□□□□□ -1.52
CD44-236ENST00000533222 NAPBQ9H115 298 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 Q9H521 79 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 EPS8L2Q9H6S3 715 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 TDRD3Q9H7E2 651 aaKnown RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 ATP13A3Q9H7F0 1226 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 GDF3Q9NR23 364 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 KLHL1Q9NR64 748 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 SERINC1Q9NRX5 453 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 RGS18Q9NS28 235 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 FGFR1OP2Q9NVK5 253 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 KCMF1Q9P0J7 381 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 TMEM9Q9P0T7 183 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 ENOPH1Q9UHY7 261 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 APPL1Q9UKG1 709 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 CDH9Q9ULB4 789 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 PCDHGA3Q9Y5H0 932 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 GMPPBQ9Y5P6 360 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 DUSP10Q9Y6W6 482 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 MYH15Q9Y2K3 1946 aa5.54□□□□□ -1.52
CD44-236ENST00000533222 SETD1AO15047 1707 aaKnown RBP5.54□□□□□ -1.52
CD44-236ENST00000533222 LRRC7Q96NW7 1537 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 RIMS1Q86UR5 1692 aaKnown RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 SF3B1O75533 1304 aaKnown RBP eCLIP5.53□□□□□ -1.52
CD44-236ENST00000533222 OTOL1A6NHN0 477 aaPredicted RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 ATP6V1G2-DDX39BF2Z307 99 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 F8W036 122 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 H0YCG3 227 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 STMND1H3BQB6 276 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 hCG_2039718K7EN88 272 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 MASP2O00187 686 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 PSMD11O00231 422 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 TXNDC9O14530 226 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 AP3D1O14617 1153 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 CAPN9O14815 690 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 SYN3O14994 580 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 ADCY6O43306 1168 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 TOM1O60784 492 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 SOCS5O75159 536 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 FKBP6O75344 327 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 DCTN3O75935 186 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 ZWINTO95229 277 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 TGM6O95932 706 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 SPATA31D3P0C874 917 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 ICAM2P13598 275 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 RARGP13631 454 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 IL1R1P14778 569 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 HNRNPLP14866 589 aaKnown RBP eCLIP5.53□□□□□ -1.52
CD44-236ENST00000533222 CPA1P15085 419 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 AKR1B1P15121 316 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 GNSP15586 552 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 TCP1P17987 556 aaKnown RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 CDH2P19022 906 aaPredicted RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 IGHMBP2P38935 993 aaKnown RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 IL6STP40189 918 aaPredicted RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 PPP1R2P41236 205 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 YAP1P46937 504 aaKnown RBP5.53□□□□□ -1.52
CD44-236ENST00000533222 CCR3P51677 355 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 CHN2P52757 468 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 SLC12A2P55011 1212 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 LGALS4P56470 323 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 BCAR1P56945 870 aa5.53□□□□□ -1.52
CD44-236ENST00000533222 C21orf59P57076 290 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms