RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PNCKQ6P2M8 343 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 GUSBP11Q6P575 273 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 SPOCD1Q6ZMY3 1216 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 CCDC13Q8IYE1 715 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 CCDC170Q8IYT3 715 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 LRRC57Q8N9N7 239 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 ACRBPQ8NEB7 543 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 CCL4L1Q8NHW4 92 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 LMX1AQ8TE12 382 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 PDCD6IPQ8WUM4 868 aaKnown RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 DTD2Q96FN9 168 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 TRIM10Q9UDY6 481 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 RABGEF1Q9UJ41 708 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 HEY1Q9Y5J3 304 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 hCG_1818297A0A087WSY0 165 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 LMO7DNF2Z398 122 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 TOR1BO14657 336 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 CEACAM5P06731 702 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 HOXC4P09017 264 aaPredicted RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 STC1P52823 247 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 KIAA1024LP59773 190 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 SRP54P61011 504 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 DYNLT1P63172 113 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 TARDBPQ13148 414 aaKnown RBP eCLIP10.66□□□□□ -0.7
CD44-227ENST00000528086 QPCTQ16769 361 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 INAVAQ3KP66 663 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 CFAP58Q5T655 872 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 ARMC12Q5T9G4 340 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 LRRC66Q68CR7 880 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 ESRP1Q6NXG1 681 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 AADACL2Q6P093 401 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 ENPP7Q6UWV6 458 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 TMPRSS12Q86WS5 348 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 PROSER1Q86XN7 944 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 NRROSQ86YC3 692 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 HID1Q8IV36 788 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 MAP7D3Q8IWC1 876 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 RHOT1Q8IXI2 618 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 ZCCHC14Q8WYQ9 949 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 SCAMP4Q969E2 229 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 TBATAQ96M53 351 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 GORASP1Q9BQQ3 440 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 TEX101Q9BY14 249 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 POLR1EQ9GZS1 481 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 ABCG8Q9H221 673 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 C10orf88Q9H8K7 445 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 APOBEC3BQ9UH17 382 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 LCMT1Q9UIC8 334 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 RALYQ9UKM9 306 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 CNOT6Q9ULM6 557 aaKnown RBP10.66□□□□□ -0.7
CD44-227ENST00000528086 DGKBQ9Y6T7 804 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 ADAMTS20P59510 1910 aa10.66□□□□□ -0.7
CD44-227ENST00000528086 PMS2P1A4D2B8 440 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 GRID2IPA4D2P6 1211 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 TPP1O14773 563 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 APOL1O14791 398 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PJA2O43164 708 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PSTPIP1O43586 416 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 OPA1O60313 960 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 CST8O60676 142 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 TGM2P21980 687 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PTPN3P26045 913 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 CD86P42081 329 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 POLD2P49005 469 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 THOP1P52888 689 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PDX1P52945 283 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 POLR2LP62875 67 aaKnown RBP10.65□□□□□ -0.7
CD44-227ENST00000528086 PPARDQ03181 441 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 ILKQ13418 452 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 ACOX1Q15067 660 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 FAXCQ5TGI0 409 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 DENND2CQ68D51 928 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 TIGD7Q6NT04 549 aaPredicted RBP10.65□□□□□ -0.7
CD44-227ENST00000528086 C11orf63Q6NUN7 778 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 RFX6Q8HWS3 928 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 KATNAL2Q8IYT4 538 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 DCBLD1Q8N8Z6 715 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 KYQ8NBH2 561 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 CCNYQ8ND76 341 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 SPATA22Q8NHS9 363 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 ALG3Q92685 438 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 IMP4Q96G21 291 aaKnown RBP10.65□□□□□ -0.7
CD44-227ENST00000528086 WDR92Q96MX6 357 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 LYSMD1Q96S90 227 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 RBM15Q96T37 977 aaKnown RBP eCLIP10.65□□□□□ -0.7
CD44-227ENST00000528086 C1QTNF7Q9BXJ2 289 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 FRMD8Q9BZ67 464 aaPredicted RBP10.65□□□□□ -0.7
CD44-227ENST00000528086 TMEM168Q9H0V1 697 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 AMACRQ9UHK6 382 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 CD84Q9UIB8 345 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PLEKHM1Q9Y4G2 1056 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 PCDHB1Q9Y5F3 818 aa10.65□□□□□ -0.7
CD44-227ENST00000528086 EME2A4GXA9 379 aaPredicted RBP10.64□□□□□ -0.71
CD44-227ENST00000528086 CAPN8A6NHC0 703 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 BTNL10A8MVZ5 291 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 PSMD11O00231 422 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 SPOPO43791 374 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 NOBOXO60393 691 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 CLDN7O95471 211 aa10.64□□□□□ -0.71
CD44-227ENST00000528086 MT-CYBP00156 380 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms