RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 MZB1Q8WU39 189 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 POMGNT1Q8WZA1 660 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 SNX19Q92543 992 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 HDAC2Q92769 488 aaKnown RBP5.83□□□□□ -1.48
CD44-225ENST00000527326 PROX1Q92786 737 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 PTP4A1Q93096 173 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 RNF34Q969K3 372 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 TBC1D20Q96BZ9 403 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 ST6GAL2Q96JF0 529 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 KLHL32Q96NJ5 620 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 BBS4Q96RK4 519 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 SORT1Q99523 831 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 IL12RB2Q99665 862 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 APOL4Q9BPW4 351 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 KCTD14Q9BQ13 255 aaPredicted RBP5.83□□□□□ -1.48
CD44-225ENST00000527326 TINF2Q9BSI4 451 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 MYL10Q9BUA6 226 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 ADI1Q9BV57 179 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 KIFC3Q9BVG8 833 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.83□□□□□ -1.48
CD44-225ENST00000527326 INTS2Q9H0H0 1204 aaKnown RBP5.83□□□□□ -1.48
CD44-225ENST00000527326 LHX5Q9H2C1 402 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 ACSS3Q9H6R3 686 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 NIPAL2Q9H841 368 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 KMT5AQ9NQR1 393 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 NECTIN3Q9NQS3 549 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 DUS2Q9NX74 493 aaKnown RBP5.83□□□□□ -1.48
CD44-225ENST00000527326 EHD3Q9NZN3 535 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 TRPM5Q9NZQ8 1165 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 SIRPGQ9P1W8 387 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 CPNE7Q9UBL6 633 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 APEX2Q9UBZ4 518 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 PRKAG2Q9UGJ0 569 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 PGAP2Q9UHJ9 254 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 RNF112Q9ULX5 631 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 DTX4Q9Y2E6 619 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 IPPQ9Y573 584 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 RAD54BQ9Y620 910 aa5.83□□□□□ -1.48
CD44-225ENST00000527326 FLT4P35916 1363 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PRR23AA6NEV1 266 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 EFCAB10A6NFE3 127 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 LACTBL1A8MY62 500 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 E5RJQ4 531 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 STX16-NPEPL1H3BU86 382 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 M0R3G1 203 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 TRAF5O00463 557 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 NOP56O00567 594 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 TRIM38O00635 465 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 E2F3O00716 465 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 COPEO14579 308 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 NKRFO15226 690 aaKnown RBP eCLIP5.82□□□□□ -1.48
CD44-225ENST00000527326 STX7O15400 261 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 GPAA1O43292 621 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 TRIM3O75382 744 aaPredicted RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 PPM1BO75688 479 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 SNX4O95219 450 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 KCNH1O95259 989 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 CFBP00751 764 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 ITGB1P05556 798 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PRKCBP05771 671 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 HOXD4P09016 255 aaPredicted RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 CTSHP09668 335 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 DLATP10515 647 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 ACADMP11310 421 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 FCGR1AP12314 374 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 COMTP21964 271 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 EEF1B2P24534 225 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 GNA15P30679 374 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 SLC7A1P30825 629 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 SOX18P35713 384 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 RPS5P46782 204 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 MFAP3P55082 362 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 GABARAPL2P60520 117 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 ACTR2P61160 394 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 RPL10AP62906 217 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 ZNF45Q02386 682 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PTPN12Q05209 780 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 DBPQ10586 325 aaPredicted RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 BST1Q10588 318 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 MERTKQ12866 999 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 SEMA3BQ13214 749 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 ORC2Q13416 577 aaPredicted RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 TNK1Q13470 666 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PDK2Q15119 407 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 NRF1Q16656 503 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 UBE2SQ16763 222 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 SLC36A3Q495N2 470 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 FUT11Q495W5 492 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 FAM76BQ5HYJ3 339 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 RBM48Q5RL73 367 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 PIK3R6Q5UE93 754 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PDPK2PQ6A1A2 396 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 TIGD3Q6B0B8 471 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 PM20D1Q6GTS8 502 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 OR7E24Q6IFN5 339 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 TYW3Q6IPR3 259 aaKnown RBP5.82□□□□□ -1.48
CD44-225ENST00000527326 DPY19L2P1Q6NXN4 242 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 BRAT1Q6PJG6 821 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 MACC1Q6ZN28 852 aa5.82□□□□□ -1.48
CD44-225ENST00000527326 DPY19L3Q6ZPD9 716 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms