RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 WSCD2Q2TBF2 565 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 HLA-BQ31612 363 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 LRRC66Q68CR7 880 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 GCNT7Q6ZNI0 430 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 Q6ZSR6 202 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 KLHDC8BQ8IXV7 354 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 NRSN1Q8IZ57 195 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 PRELID2Q8N945 189 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 TP53I13Q8NBR0 393 aaPredicted RBP14.28□□□□□ -0.12
NUP54-216ENST00000514901 IPMKQ8NFU5 416 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 ATL2Q8NHH9 583 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 TRIM44Q96DX7 344 aaPredicted RBP14.28□□□□□ -0.12
NUP54-216ENST00000514901 MS4A14Q96JA4 679 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 MYOCQ99972 504 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 GTPBP2Q9BX10 602 aaKnown RBP14.28□□□□□ -0.12
NUP54-216ENST00000514901 TRABDQ9H4I3 376 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 DNAAF2Q9NVR5 837 aaKnown RBP14.28□□□□□ -0.12
NUP54-216ENST00000514901 HACD3Q9P035 362 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 FEZ2Q9UHY8 353 aaPredicted RBP14.28□□□□□ -0.12
NUP54-216ENST00000514901 COQ6Q9Y2Z9 468 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 SNX11Q9Y5W9 270 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 SAR1BQ9Y6B6 198 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 PLXNA2O75051 1894 aa14.27□□□□□ -0.12
NUP54-216ENST00000514901 C1orf232A0A0U1RR37 186 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 POM121BA6NF01 834 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ERI2A8K979 691 aaKnown RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 CDX4O14627 284 aaPredicted RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 YKT6O15498 198 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PYGLP06737 847 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ZNF883P0CG24 379 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PFN3P60673 137 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ETF1P62495 437 aaKnown RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 SLC14A1Q13336 389 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 MTM1Q13496 603 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PTK2BQ14289 1009 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 CDKN3Q16667 212 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 CYP1B1Q16678 543 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ZNF423Q2M1K9 1284 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 STPG1Q5TH74 334 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 RANBP10Q6VN20 620 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 GSTA5Q7RTV2 222 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 HSD11B1LQ7Z5J1 315 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PTAR1Q7Z6K3 402 aaPredicted RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 TECPR1Q7Z6L1 1165 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 TSPAN33Q86UF1 283 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 MINDY1Q8N5J2 469 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 MAGOHBQ96A72 148 aaKnown RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 NUS1Q96E22 293 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 DTD2Q96FN9 168 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 CDH19Q9H159 772 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 GAREM1Q9H706 876 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ZFYVE1Q9HBF4 777 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 FSCN3Q9NQT6 498 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 RAD18Q9NS91 495 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 RXFP3Q9NSD7 469 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PAK5Q9P286 719 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 RNF14Q9UBS8 474 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 CA5BQ9Y2D0 317 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 ASCC3Q8N3C0 2202 aaKnown RBP14.27□□□□□ -0.13
NUP54-216ENST00000514901 LRRK1Q38SD2 2015 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 PCDH15Q96QU1 1955 aa14.27□□□□□ -0.13
NUP54-216ENST00000514901 F5H423 210 aaPredicted RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 H0Y8X5 98 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 GDF9O60383 454 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 CLDN7O95471 211 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 METTL18O95568 372 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 HOXC4P09017 264 aaPredicted RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 ATXN1LP0C7T5 689 aaKnown RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 GM2AP17900 193 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 TEAD1P28347 426 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ADRA1AP35348 466 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 IGFALSP35858 605 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 RXRGP48443 463 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ARRB1P49407 418 aaPredicted RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 DPTQ07507 201 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 SUZ12Q15022 739 aaKnown RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 IRF4Q15306 451 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 SIRPB2Q5JXA9 342 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 DENND2CQ68D51 928 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ESRP1Q6NXG1 681 aaKnown RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 LAYNQ6UX15 382 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 Q6ZVL8 140 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ZNF765Q7L2R6 523 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 OR13H1Q8NG92 308 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ELF4Q99607 663 aaPredicted RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 GORASP1Q9BQQ3 440 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 FICDQ9BVA6 458 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 GPR63Q9BZJ6 419 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 LRRC40Q9H9A6 602 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ARNT2Q9HBZ2 717 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 MBNL1Q9NR56 388 aaKnown RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 GPR27Q9NS67 375 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 PKD2L2Q9NZM6 624 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 CDV3Q9UKY7 258 aaKnown RBP14.26□□□□□ -0.13
NUP54-216ENST00000514901 PCDHGB2Q9Y5G2 931 aa14.26□□□□□ -0.13
NUP54-216ENST00000514901 ADAMTS9Q9P2N4 1935 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 CNOT1A5YKK6 2376 aaKnown RBP14.25□□□□□ -0.13
NUP54-216ENST00000514901 C4orf47A7E2U8 309 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 PDE2AO00408 941 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms