RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 C1SP09871 688 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 TPH1P17752 444 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 RPL21P46778 160 aaKnown RBP29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 STC1P52823 247 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 PTSQ03393 145 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 RAB17Q9H0T7 212 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 DPH5Q9H2P9 285 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 TRABDQ9H4I3 376 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 EBF2Q9HAK2 575 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 SMG5Q9UPR3 1016 aaKnown RBP29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 UTP11Q9Y3A2 253 aaKnown RBP29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 GPR179Q6PRD1 2367 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 ZNF106Q9H2Y7 1883 aaKnown RBP29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 GOLGA8MH3BSY2 632 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 SLC31A1O15431 190 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 GM2AP17900 193 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 SGCGQ13326 291 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 PCGF5Q86SE9 256 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 LRRN4CLQ8ND94 238 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 COQ10AQ96MF6 247 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 MYOCQ99972 504 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 FZD3Q9NPG1 666 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 EIF2B4Q9UI10 523 aaKnown RBP29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 SNX24Q9Y343 169 aa29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 ATXN2Q99700 1313 aaKnown RBP29.62■■■□□ 2.33
LIMCH1-211ENST00000509638 A0A1W2PPC4 97 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 RECQL5O94762 991 aaPredicted RBP29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 ITPKAP23677 461 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 ETV3P41162 512 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 SARNPP82979 210 aaKnown RBP29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 SLC7A5Q01650 507 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 MSLNQ13421 630 aaPredicted RBP29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 MTM1Q13496 603 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 POU6F1Q14863 301 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 HOOK3Q86VS8 718 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 TTC30BQ8N4P2 665 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 EID2BQ96D98 161 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 ORAI3Q9BRQ5 295 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 RAB23Q9ULC3 237 aa29.61■■■□□ 2.33
LIMCH1-211ENST00000509638 PAK4O96013 591 aaPredicted RBP29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 CD27P26842 260 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 MAOBP27338 520 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 WDR45BQ5MNZ6 344 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 DUPD1Q68J44 220 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 RGL4Q8IZJ4 473 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 C1QTNF7Q9BXJ2 289 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 MIR1-1HGQ9H1L0 117 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 ARL5AQ9Y689 179 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 SLCO1B1Q9Y6L6 691 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 NUDT1P36639 197 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 SESN2P58004 480 aaPredicted RBP29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 SEPT6Q14141 434 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 MORF4L2Q15014 288 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 CERCAMQ5T4B2 595 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 LRRC8BQ6P9F7 803 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 Q6ZVL8 140 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 CBARPQ8N350 705 aaPredicted RBP29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 MCUQ8NE86 351 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 BRSK1Q8TDC3 778 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 NUS1Q96E22 293 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 DTD2Q96FN9 168 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 DMTF1Q9Y222 760 aa29.6■■■□□ 2.33
LIMCH1-211ENST00000509638 WNT9AO14904 365 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 HNRNPA2B1P22626 353 aaKnown RBP29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 ITGA8P53708 1063 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 RFLNAQ6ZTI6 216 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 CYP2U1Q7Z449 544 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 TMC3Q7Z5M5 1100 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 ASB12Q8WXK4 309 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 DNASE2BQ8WZ79 361 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 SERAC1Q96JX3 654 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 SERPINB12Q96P63 405 aa29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 XAB2Q9HCS7 855 aaKnown RBP29.59■■■□□ 2.33
LIMCH1-211ENST00000509638 RAD51BO15315 384 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 HMGCLP35914 325 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 NBL1P41271 181 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 CREB5Q02930 508 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 AGERQ15109 404 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 TAF1AQ15573 450 aaPredicted RBP29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 HIBCHQ6NVY1 386 aaPredicted RBP29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 CAND1Q86VP6 1230 aaKnown RBP29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 HINFPQ9BQA5 517 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 PKD2L2Q9NZM6 624 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 CD84Q9UIB8 345 aa29.58■■■□□ 2.33
LIMCH1-211ENST00000509638 TP53BP1Q12888 1972 aaPredicted RBP29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 AP3B1O00203 1094 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 BUD23O43709 281 aaKnown RBP29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 AVILO75366 819 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 CRTAMO95727 393 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 AKT2P31751 481 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 CCDC38Q502W7 563 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 TECPR1Q7Z6L1 1165 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 ZCCHC9Q8N567 271 aaKnown RBP29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 SLC6A18Q96N87 628 aa29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 KLF6Q99612 283 aaPredicted RBP29.57■■■□□ 2.32
LIMCH1-211ENST00000509638 C2orf81A6NN90 581 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 TP73O15350 636 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 SPINT3P49223 89 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 CALCOCO2Q13137 446 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms