RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TRNT1Q96Q11 434 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 PANX1Q96RD7 426 aa11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 CCDC86Q9H6F5 360 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 ARL8BQ9NVJ2 186 aa11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 ARL15Q9NXU5 204 aa11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 IGSF9Q9P2J2 1179 aa11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 NR2E1Q9Y466 385 aa11.24□□□□□ -0.61
LIMCH1-208ENST00000508501 NCANO14594 1321 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 C19orf81C9J6K1 198 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PRRG1O14668 218 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PAPSS1O43252 624 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF14P17017 642 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 HOXD10P28358 340 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF45Q02386 682 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MGAT5BQ3V5L5 792 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 APOBEC3FQ8IUX4 373 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC30A8Q8IWU4 369 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 IFT27Q9BW83 186 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ABCB9Q9NP78 766 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 INTS7Q9NVH2 962 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GULP1Q9UBP9 304 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UBQLN2Q9UHD9 624 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PCDHGC3Q9UN70 934 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 NCKAP1Q9Y2A7 1128 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RPL36Q9Y3U8 105 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PCDHGB7Q9Y5F8 929 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 KAT6BQ8WYB5 2073 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PRR5-ARHGAP8B1AHC4 643 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RAMP2O60895 175 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ITGB3P05106 788 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 TXNP10599 105 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 S100PP25815 95 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CRHR1P34998 444 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ARHGAP8P85298 464 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MERTKQ12866 999 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GRB10Q13322 594 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GXYLT1Q4G148 440 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MPZL3Q6UWV2 235 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF767PQ75MW2 155 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 KIF18BQ86Y91 864 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 KAT2AQ92830 837 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GFM1Q96RP9 751 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 SEPT5Q99719 369 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 EBNA1BP2Q99848 306 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 COLEC11Q9BWP8 271 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 DGKBQ9Y6T7 804 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZSCAN5CA6NGD5 496 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PLD2O14939 933 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RPS2P15880 293 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CD44P16070 742 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CES1P23141 567 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MPP1Q00013 466 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GNA12Q03113 381 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 FSTL1Q12841 308 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF423Q2M1K9 1284 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ERFEQ4G0M1 354 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 C6orf183Q5T699 404 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GPRC6AQ5T6X5 926 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PRAMEF17Q5VTA0 474 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 METTL3Q86U44 580 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZC3H7AQ8IWR0 971 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UBQLNLQ8IYU4 475 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CCDC24Q8N4L8 307 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RBM15BQ8NDT2 890 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CIB1Q99828 191 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 TARS2Q9BW92 718 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ZNF717Q9BY31 904 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 TPK1Q9H3S4 243 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 GDAP2Q9NXN4 497 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MTRRQ9UBK8 725 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 C2orf74A8MZ97 194 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 H3BNH8 94 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A9O60656 530 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RBMXL2O75526 392 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 TIPRLO75663 272 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 FABP3P05413 133 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC2A2P11168 524 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A6P19224 532 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 ACO1P21399 889 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A1P22309 533 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A4P22310 534 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A3P35503 534 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MCCD1P59942 119 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 LIPEQ05469 1076 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 PON3Q15166 354 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 IQSEC1Q6DN90 963 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 RTL4Q6ZR62 310 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UNC5BQ8IZJ1 945 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 OR10H5Q8NGA6 315 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 SEMA6BQ9H3T3 888 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 FBXO44Q9H4M3 255 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A7Q9HAW7 530 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A10Q9HAW8 530 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 UGT1A8Q9HAW9 530 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 CISHQ9NSE2 258 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 SETD4Q9NVD3 440 aa11.23□□□□□ -0.61
LIMCH1-208ENST00000508501 MED14O60244 1454 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 FGBP02675 491 aa11.22□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC26A2P50443 739 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms