RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 PITX1P78337 314 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 Q3C1V9 767 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 CLEC6AQ6EIG7 209 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 TMEM214Q6NUQ4 689 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 PTRH1Q86Y79 214 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 SPARTQ8N0X7 666 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 HERC2P3Q9BVR0 1158 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 TPK1Q9H3S4 243 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 GSTO2Q9H4Y5 243 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 PRMT7Q9NVM4 692 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 RSL1D1O76021 490 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 LDLRP01130 860 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 UMPSP11172 480 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 MTHFD1P11586 935 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 BCAT1P54687 386 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 NAPEPLDQ6IQ20 393 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 PKN3Q6P5Z2 889 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 ANKRD13BQ86YJ7 626 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 LRRC58Q96CX6 371 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 C19orf60Q96EN9 201 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 VMP1Q96GC9 406 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 ELMO2Q96JJ3 720 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 BTN2A3PQ96KV6 586 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 UBXN10Q96LJ8 280 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 FUNDC2Q9BWH2 189 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 ANKMY1Q9P2S6 941 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 ERVK-11Q9UQG0 969 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 DGKBQ9Y6T7 804 aa17.12■□□□□ 0.33
SQSTM1-211ENST00000506690 ANGPT2O15123 496 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NCAM2O15394 837 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NCAM1P13591 858 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ERCC2P18074 760 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ARNTP27540 789 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 BACE1P56817 501 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 FOXM1Q08050 763 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 TRIM32Q13049 653 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 CSHL1Q14406 222 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 SKIV2LQ15477 1246 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 KIF19Q2TAC6 998 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 RBM48Q5RL73 367 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 BTBD8Q5XKL5 378 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 CRTC3Q6UUV7 619 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 PDZD4Q76G19 769 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 PIWIL3Q7Z3Z3 882 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 LINC00523Q86TU6 105 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NT5C3BQ969T7 300 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ZBED3Q96IU2 234 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC30A3Q99726 388 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 DPEP3Q9H4B8 488 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 AKTIPQ9H8T0 292 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 CDHR5Q9HBB8 845 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 UBP1Q9NZI7 540 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 SUN2Q9UH99 717 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ANAPC2Q9UJX6 822 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NFKBIEO00221 500 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 MTSS1O43312 755 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 PTPN2P17706 415 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 POU4F1Q01851 419 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 POU5F1BQ06416 359 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 AMHR2Q16671 573 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 CLPPQ16740 277 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 PCID2Q5JVF3 399 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ZNF280DQ6N043 979 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NANOGNBQ7Z5D8 188 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 R3HCC1LQ7Z5L2 792 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 TRAPPC12Q8WVT3 735 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 S100ZQ8WXG8 99 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 TEPSINQ96N21 525 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 TRMOQ9BU70 441 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 NFKBIZQ9BYH8 718 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 KLHL25Q9H0H3 589 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 CHST12Q9NRB3 414 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 ENPP5Q9UJA9 477 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 RBMX2Q9Y388 322 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 LOC285556D6RIA3 1793 aa17.11■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM72CH0Y354 149 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 UGT2B11O75310 529 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 EGFRP00533 1210 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 CHRM3P20309 590 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ADORA2BP29275 332 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SLC1A2P43004 574 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ACADSBP45954 432 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 HNRNPFP52597 415 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 PLK1P53350 603 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SELENBP1Q13228 472 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM187BQ17R55 369 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 INAVAQ3KP66 663 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM72AQ5TYM5 149 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 IQSEC1Q6DN90 963 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM72DQ6L9T8 149 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 METTL7BQ6UX53 244 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 CYP2U1Q7Z449 544 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 ITIH5Q86UX2 942 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 FAM72BQ86X60 149 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 NPWQ8N729 165 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 SGCDQ92629 289 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 TMEM125Q96AQ2 219 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 HDAC11Q96DB2 347 aa17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 CCDC97Q96F63 343 aaPredicted RBP17.1■□□□□ 0.33
SQSTM1-211ENST00000506690 RPL10LQ96L21 214 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms