RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KLC2Q9H0B6 622 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PDCL3Q9H2J4 239 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 CARS2Q9HA77 564 aaKnown RBP14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 GDPD2Q9HCC8 539 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 SIX2Q9NPC8 291 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PRDM8Q9NQV8 689 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 CUEDC1Q9NWM3 386 aaPredicted RBP14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 AJAP1Q9UKB5 411 aaPredicted RBP14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 KCNMB2Q9Y691 235 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 LRBAP50851 2863 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 HIVEP3Q5T1R4 2406 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 SHANK1Q9Y566 2161 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 MKRN2OSH3BPM6 223 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 PPM1DO15297 605 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 VPS4BO75351 444 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 UQCRFS1P47985 274 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 CSNK1DP48730 415 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 COPB1P53618 953 aaKnown RBP14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 CYTH1Q15438 398 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 NKAIN2Q5VXU1 208 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 DPPA4Q7L190 304 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 STRADAQ7RTN6 431 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 TIPARPQ7Z3E1 657 aaKnown RBP14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 CCDC13Q8IYE1 715 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 NETO2Q8NC67 525 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 NTAN1Q96AB6 310 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 ECHDC3Q96DC8 303 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 FRMD8Q9BZ67 464 aaPredicted RBP14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 FBXO8Q9NRD0 319 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 PHPT1Q9NRX4 125 aaPredicted RBP14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 KCTD5Q9NXV2 234 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 TMEM9Q9P0T7 183 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 UBA2Q9UBT2 640 aaPredicted RBP14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 MOSPD1Q9UJG1 213 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 DNAJC12Q9UKB3 198 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 VPS4AQ9UN37 437 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 DOPEY1Q5JWR5 2465 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 CRYBG3Q68DQ2 2970 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 CELSR2Q9HCU4 2923 aa14.25□□□□□ -0.13
PRPF40A-211ENST00000493468 WASH4PA8MWX3 477 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 RASA4BC9J798 803 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 RASA4O43374 803 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 BUB1BO60566 1050 aaPredicted RBP14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 DLGAP3O95886 979 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PRKCGP05129 697 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 CEACAM5P06731 702 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PNMA6AP0CW24 399 aaPredicted RBP14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 CYP11B1P15538 503 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 SERPINA4P29622 427 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 SDC4P31431 198 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 STAT5AP42229 794 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PTPN9P43378 593 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 FASLGP48023 281 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 STX17P56962 302 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 CCDC14Q49A88 953 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 RAB6CQ53S08 254 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 ARHGAP22Q7Z5H3 698 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 CAMK1DQ8IU85 385 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 UMODL1-AS1Q8N2C9 162 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PELI3Q8N2H9 469 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 EMC1Q8N766 993 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PATE1Q8WXA2 126 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 CENPIQ92674 756 aaPredicted RBP14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 TEX101Q9BY14 249 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 RAB6CQ9H0N0 254 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 ATP13A3Q9H7F0 1226 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 PDFQ9HBH1 243 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 METTL5Q9NRN9 209 aaKnown RBP14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 MED13Q9UHV7 2174 aa14.24□□□□□ -0.13
PRPF40A-211ENST00000493468 STK17BO94768 372 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 FUCA1P04066 466 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 NR1D1P20393 614 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 MPSTP25325 297 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 AK4P27144 223 aaPredicted RBP14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 TEAD1P28347 426 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 ERCC5P28715 1186 aaPredicted RBP14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 POLR2LP62875 67 aaKnown RBP14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 NOMO3P69849 1222 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 CDO1Q16878 200 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 C15orf59Q2T9L4 293 aaPredicted RBP14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 C2CD6Q53TS8 623 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 SLC30A9Q6PML9 568 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 WDR74Q6RFH5 385 aaPredicted RBP14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 ASB18Q6ZVZ8 466 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 KDELC2Q7Z4H8 507 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 HEATR4Q86WZ0 1026 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 UNC5BQ8IZJ1 945 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 ESX1Q8N693 406 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 CCDC185Q8N715 623 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 SPOCK2Q92563 424 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 COQ10AQ96MF6 247 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 SUFUQ9UMX1 484 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 ST14Q9Y5Y6 855 aa14.23□□□□□ -0.13
PRPF40A-211ENST00000493468 GOLGA6L4A6NEF3 574 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 C2CD4BA6NLJ0 364 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 K7EM74 188 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 TEX33O43247 280 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 DDAH2O95865 285 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 IVLP07476 585 aa14.22□□□□□ -0.13
PRPF40A-211ENST00000493468 GNLYP22749 145 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms