RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C9JVG2 144 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 TNFAIP8O95379 198 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 C8BP07358 591 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SPATA31D3P0C874 917 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 PRSS56P0CW18 603 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 CD1DP15813 335 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 ACVRL1P37023 503 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 TIAL1Q01085 375 aaKnown RBP eCLIP17.97■□□□□ 0.47
VIM-206ENST00000487938 GALNT1Q10472 559 aaPredicted RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 GALNT3Q14435 633 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 POLD3Q15054 466 aaPredicted RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 GEN1Q17RS7 908 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 UGT3A2Q3SY77 523 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SPATA31D4Q6ZUB0 917 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 PTGR2Q8N8N7 351 aaPredicted RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 OR13C4Q8NGS5 318 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 L3HYPDHQ96EM0 354 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 UROC1Q96N76 676 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SLC25A23Q9BV35 468 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 PATJQ8NI35 1801 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 A0A1B0GTW7 788 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 CCDC160A6NGH7 325 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 UBXN8O00124 270 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 MUSKO15146 869 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 VILLO15195 856 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 CD3EAPO15446 510 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 SRP72O76094 671 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 SLC7A2P52569 658 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 FOXA1P55317 472 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 HERVK_113P63132 956 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 LSAMPQ13449 338 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 KIF19Q2TAC6 998 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 FAM45BPQ6NSW5 357 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 AHI1Q8N157 1196 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 FAM110BQ8TC76 370 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 FAM45AQ8TCE6 357 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 DGCR14Q96DF8 476 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 MYEOVQ96EZ4 313 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 NSUN5Q96P11 429 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 ERVK-6Q9BXR3 956 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 NOL11Q9H8H0 719 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 MRPL40Q9NQ50 206 aaKnown RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 POLR3BQ9NW08 1133 aaPredicted RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 TMEM181Q9P2C4 612 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 LOC285095A0A1B0GVY8 99 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 GLP2RO95838 553 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 CHRM1P11229 460 aaPredicted RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 OR4D1Q15615 310 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 PFKFB4Q16877 469 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 FBXO48Q5FWF7 155 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 C6orf10Q5SRN2 563 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 CLYBLQ8N0X4 340 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 TEX26Q8N6G2 289 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 ATAD1Q8NBU5 361 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 KLHDC9Q8NEP7 349 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 RPRD1AQ96P16 312 aaPredicted RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 KCNA7Q96RP8 456 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 SLC29A1Q99808 456 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 MID1IP1Q9NPA3 183 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.96■□□□□ 0.472e-8■■■■□ 26.1
VIM-206ENST00000487938 FNIP2Q9P278 1114 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 PRG3Q9Y2Y8 225 aaPredicted RBP17.96■□□□□ 0.47
VIM-206ENST00000487938 DNAJC15Q9Y5T4 150 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 ACTL7AQ9Y615 435 aa17.96■□□□□ 0.47
VIM-206ENST00000487938 DOCK4Q8N1I0 1966 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 CCDC162PA2VCL2 907 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 CDK14O94921 469 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 ASGR1P07306 291 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 NELFEP18615 380 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 GPX3P22352 226 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 OR1G1P47890 313 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 HSPA13P48723 471 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 INHBEP58166 350 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 STX1BP61266 288 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 TRAP1Q12931 704 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 TRIM32Q13049 653 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 MTX3Q5HYI7 312 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 MSANTD2Q6P1R3 559 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 RETREG3Q86VR2 466 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 ATP6V0D2Q8N8Y2 350 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 TRMOQ9BU70 441 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 MRPS26Q9BYN8 205 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 ZNF696Q9H7X3 374 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 NDUFA13Q9P0J0 144 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 NR5A2O00482 541 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 RAMP2O60895 175 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 FDXRP22570 491 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 ARPP19P56211 112 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 DYNC1I2Q13409 638 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 GRB7Q14451 532 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 CYTH1Q15438 398 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 MYLK3Q32MK0 819 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 ARMC3Q5W041 872 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 HMBOX1Q6NT76 420 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 GALNT7Q86SF2 657 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 PPWD1Q96BP3 646 aaKnown RBP17.95■□□□□ 0.46
VIM-206ENST00000487938 MPP4Q96JB8 637 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 SLC45A3Q96JT2 553 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 CIB1Q99828 191 aa17.95■□□□□ 0.46
VIM-206ENST00000487938 FBXO44Q9H4M3 255 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms