RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 GKN2Q86XP6 184 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 PDCD7Q8N8D1 485 aaKnown RBP12.9□□□□□ -0.34
CHMP3-208ENST00000486404 OR56A4Q8NGH8 313 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 IFI44Q8TCB0 444 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 MAPK15Q8TD08 544 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 TSACCQ96A04 125 aaPredicted RBP12.9□□□□□ -0.34
CHMP3-208ENST00000486404 DTD2Q96FN9 168 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 SCRN2Q96FV2 425 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 PDXPQ96GD0 296 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 RBM41Q96IZ5 413 aaKnown RBP12.9□□□□□ -0.34
CHMP3-208ENST00000486404 COQ10AQ96MF6 247 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 MCCC1Q96RQ3 725 aaPredicted RBP12.9□□□□□ -0.34
CHMP3-208ENST00000486404 ABCG4Q9H172 646 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 GOLPH3Q9H4A6 298 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 CLCA2Q9UQC9 943 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 CHKBQ9Y259 395 aa12.9□□□□□ -0.34
CHMP3-208ENST00000486404 ZFC3H1O60293 1989 aaKnown RBP12.9□□□□□ -0.34
CHMP3-208ENST00000486404 A0A0A6YYK5 440 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 A0A0J9YYE9 177 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 CPED1A4D0V7 1026 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 CAPN8A6NHC0 703 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 GCATO75600 419 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 TNFP01375 233 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 TRBC1P01850 177 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 GP1BAP07359 652 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 PDHA1P08559 390 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 GIMD1P0DJR0 217 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 MYF5P13349 255 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 ZNF30P17039 623 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 CD86P42081 329 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 RPL26P61254 145 aaKnown RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 INSM1Q01101 510 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 SLC10A2Q12908 348 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 ZBTB17Q13105 803 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 C6orf132Q5T0Z8 1188 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 CCDC181Q5TID7 509 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 KAZNQ674X7 775 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 PNCKQ6P2M8 343 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 MFSD7Q6UXD7 560 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 NPNTQ6UXI9 565 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 EFL1Q7Z2Z2 1120 aaKnown RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 HSD11B1LQ7Z5J1 315 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 KIAA1328Q86T90 577 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 TSPAN33Q86UF1 283 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 HEATR4Q86WZ0 1026 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 MDM1Q8TC05 714 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 PIH1D2Q8WWB5 315 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 NAT6Q93015 286 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 FUBP1Q96AE4 644 aaKnown RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 ADGRE3Q9BY15 652 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 CEP41Q9BYV8 373 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 BRD8Q9H0E9 1235 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 SUDS3Q9H7L9 328 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 SYNDIG1Q9H7V2 258 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 PCDH9Q9HC56 1237 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 SIRPGQ9P1W8 387 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 SALL4Q9UJQ4 1053 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 PNMA8BQ9ULN7 279 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 RPL26L1Q9UNX3 145 aaKnown RBP12.89□□□□□ -0.35
CHMP3-208ENST00000486404 TFR2Q9UP52 801 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 ALG6Q9Y672 507 aa12.89□□□□□ -0.35
CHMP3-208ENST00000486404 MACROD2A1Z1Q3 448 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 CST8O60676 142 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 CELA2BP08218 269 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-208ENST00000486404 GM2AP17900 193 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 TGM2P21980 687 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 CDKN2BP42772 138 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 TNNT3P45378 269 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-208ENST00000486404 NIPAL4Q0D2K0 466 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 TARDBPQ13148 414 aaKnown RBP eCLIP12.88□□□□□ -0.35
CHMP3-208ENST00000486404 TFDP3Q5H9I0 405 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 GUSBP11Q6P575 273 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 SPOCD1Q6ZMY3 1216 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 Q6ZVL8 140 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 KATNAL2Q8IYT4 538 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 TXLNBQ8N3L3 684 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 ARL10Q8N8L6 244 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 KYQ8NBH2 561 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 ARRDC2Q8TBH0 407 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 OR1E3Q8WZA6 343 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 AP2M1Q96CW1 435 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 CALR3Q96L12 384 aaKnown RBP12.88□□□□□ -0.35
CHMP3-208ENST00000486404 AGAP3Q96P47 875 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 OLFM3Q96PB7 478 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 DEPDC7Q96QD5 511 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 BOCQ9BWV1 1114 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 FGF22Q9HCT0 170 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 GULP1Q9UBP9 304 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 CD84Q9UIB8 345 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 GPR34Q9UPC5 381 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 EPN1Q9Y6I3 576 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-208ENST00000486404 DGKBQ9Y6T7 804 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 SCN8AQ9UQD0 1980 aa12.88□□□□□ -0.35
CHMP3-208ENST00000486404 ANKRD11Q6UB99 2663 aaPredicted RBP12.87□□□□□ -0.35
CHMP3-208ENST00000486404 RP1P56715 2156 aa12.87□□□□□ -0.35
CHMP3-208ENST00000486404 ACACAQ13085 2346 aa12.87□□□□□ -0.35
CHMP3-208ENST00000486404 LY6G6EA0A0G2JKS1 128 aa12.87□□□□□ -0.35
CHMP3-208ENST00000486404 C1orf232A0A0U1RR37 186 aa12.87□□□□□ -0.35
CHMP3-208ENST00000486404 PRSS38A1L453 326 aa12.87□□□□□ -0.35
CHMP3-208ENST00000486404 TRABD2BA6NFA1 517 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms