RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TMCC1O94876 653 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 SEC31AO94979 1220 aaKnown RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 C1SP09871 688 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 ZSCAN5DPP0CG00 497 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 ETS1P14921 441 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 EPHA8P29322 1005 aaPredicted RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 MAT2AP31153 395 aaKnown RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 IFI35P80217 286 aaPredicted RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 IL10RBQ08334 325 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 GPS1Q13098 491 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 TRIP13Q15645 432 aaPredicted RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 TMCO4Q5TGY1 634 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 LAYNQ6UX15 382 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 B4GALNT4Q76KP1 1039 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 ZNF354CQ86Y25 554 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 RYBPQ8N488 228 aaPredicted RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 NETO2Q8NC67 525 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 MAML1Q92585 1016 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 LENG8Q96PV6 779 aaPredicted RBP17.13■□□□□ 0.33
VIM-205ENST00000485947 SP110Q9HB58 689 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 GRHL1Q9NZI5 618 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 ZMIZ1Q9ULJ6 1067 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 PCDHGA1Q9Y5H4 931 aa17.13■□□□□ 0.33
VIM-205ENST00000485947 SETXQ7Z333 2677 aaKnown RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 C16orf96A6NNT2 1141 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 H2AFXP16104 143 aaPredicted RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 PTPN3P26045 913 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 FDFT1P37268 417 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 CSNK1DP48730 415 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 CARSP49589 748 aaKnown RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 VPS41P49754 854 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 RHOAP61586 193 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 WASHC5Q12768 1159 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 HLTFQ14527 1009 aaKnown RBP eCLIP17.12■□□□□ 0.33
VIM-205ENST00000485947 RFTN1Q14699 578 aaPredicted RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 ANKRD20A2Q5SQ80 823 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 ANKRD20A1Q5TYW2 823 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 ANKRD20A3Q5VUR7 823 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 IZUMO3Q5VZ72 239 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 ITPRIPL1Q6GPH6 555 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 UNQ6494/PRO21346Q6UXR6 183 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 GDPD4Q6W3E5 623 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 ARHGEF18Q6ZSZ5 1173 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 PARS2Q7L3T8 475 aaKnown RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 ABI3BPQ7Z7G0 1075 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 KDF1Q8NAX2 398 aaPredicted RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 DENND6BQ8NEG7 585 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 NSMCE1Q8WV22 266 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 HNRNPLLQ8WVV9 542 aaKnown RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 IFT81Q8WYA0 676 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 COL26A1Q96A83 441 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 ZNF599Q96NL3 588 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 IL12RB2Q99665 862 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 C1QTNF2Q9BXJ5 285 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 SLC17A9Q9BYT1 436 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 PDFQ9HBH1 243 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 UBA2Q9UBT2 640 aaPredicted RBP17.12■□□□□ 0.33
VIM-205ENST00000485947 FTSJ1Q9UET6 329 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 WDFY3Q8IZQ1 3526 aa17.12■□□□□ 0.33
VIM-205ENST00000485947 TOR1BO14657 336 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 SLC31A1O15431 190 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 HYAL3O43820 417 aaPredicted RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 PRAMEF11O60813 436 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 CCNB1P14635 433 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 SGCGQ13326 291 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 MORF4L2Q15014 288 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 SHBQ15464 509 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 TEX44Q53QW1 395 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 ARHGAP36Q6ZRI8 547 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 PRUNE1Q86TP1 453 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 HOOK3Q86VS8 718 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 SPATS2Q86XZ4 545 aaKnown RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 ZNF567Q8N184 647 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 CCDC110Q8TBZ0 833 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 LRRN4Q8WUT4 740 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 ANKRD7Q92527 254 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 ART4Q93070 314 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 ZNF641Q96N77 438 aaPredicted RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 TUBGCP5Q96RT8 1024 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 TMEM121BQ9BXQ6 578 aaPredicted RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 FOXP3Q9BZS1 431 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 HAUS2Q9NVX0 235 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 SEPT10Q9P0V9 454 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 KLHL8Q9P2G9 620 aaPredicted RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 MTRF1LQ9UGC7 380 aaKnown RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 ANAPC5Q9UJX4 755 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 ZFR2Q9UPR6 939 aaKnown RBP17.11■□□□□ 0.33
VIM-205ENST00000485947 SHOC2Q9UQ13 582 aa17.11■□□□□ 0.33
VIM-205ENST00000485947 PLXNA2O75051 1894 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 A6NNZ2 444 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 C1QTNF9BB2RNN3 333 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 KCNK1O00180 336 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 NEMP1O14524 444 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 AREL1O15033 823 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 UGT2B4P06133 528 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 C1QTNF9P0C862 333 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 THEGLP0DJG4 465 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 ECHS1P30084 290 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 RABIFP47224 123 aa17.1■□□□□ 0.33
VIM-205ENST00000485947 RENBPP51606 427 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms