RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CAPN14A8MX76 684 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 NRP1O14786 923 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 GAS2O43903 313 aaKnown RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 NPM3O75607 178 aaKnown RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 L1CAMP32004 1257 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 HALP42357 657 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 NKX2-5P52952 324 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 MTPNP58546 118 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 COPZ1P61923 177 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 RHDQ02161 417 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TGFBIQ15582 683 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 NOMO2Q5JPE7 1267 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 HIPK1Q86Z02 1210 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 FAR1Q8WVX9 515 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 HERC2P3Q9BVR0 1158 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ACTR8Q9H981 624 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 GMPPBQ9Y5P6 360 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 NUMA1Q14980 2115 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 LZTS3O60299 673 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 BCAS2O75934 225 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 MYO1DO94832 1006 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ZNF12P17014 697 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 LMO2P25791 158 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ADRA1BP35368 520 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PRKG2Q13237 762 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TCEAL1Q15170 157 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TRIP4Q15650 581 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 SYT16Q17RD7 645 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TEX44Q53QW1 395 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 CACHD1Q5VU97 1274 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TAS1R3Q7RTX0 852 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 AKAP14Q86UN6 197 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 KBTBD6Q86V97 674 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TP53INP2Q8IXH6 220 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ASB9Q96DX5 294 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 UGT2B28Q9BY64 529 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 A0A1B0GTW7 788 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PNMA8CA0A1B0GUJ8 204 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 HNRNPCL2B2RXH8 293 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TRIM24O15164 1050 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PMM2O15305 246 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PENKP01210 267 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 CAPN1P07384 714 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 IL12AP29459 219 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 WNT3AP56704 352 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 DEFB115Q30KQ5 88 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ANKDD1AQ495B1 522 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 THAP5Q7Z6K1 395 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PHF21AQ96BD5 680 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 MCRS1Q96EZ8 462 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 KLQ9UEF7 1012 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 C3orf18Q9UK00 162 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 G3V2T6 193 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PIP5K1BO14986 540 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 LRATO95237 230 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 CHRM5P08912 532 aaPredicted RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 MLNP12872 115 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PCSK1P29120 753 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 SERPINH1P50454 418 aaKnown RBP13.53□□□□□ -0.24
USP42-206ENST00000479544 CYP2A13Q16696 494 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 DDR2Q16832 855 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ZNF621Q6ZSS3 439 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TMEM110Q86TL2 294 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ANKRD13AQ8IZ07 590 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 ZNF778Q96MU6 729 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 TNFSF13BQ9Y275 285 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 PMF1-BGLAPU3KQ54 211 aa13.53□□□□□ -0.24
USP42-206ENST00000479544 OR51F1A6NGY5 319 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.52□□□□□ -0.24
USP42-206ENST00000479544 SPATA31C2B4DYI2 1134 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 DHRS4L1P0CG22 281 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 THRBP10828 461 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 IRF1P10914 325 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 AQP1P29972 269 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 PRDX6P30041 224 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 GRK3P35626 688 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 LAPTM5Q13571 262 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 LAPTM4AQ15012 233 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 AP5B1Q2VPB7 878 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 RBM12BQ8IXT5 1001 aaKnown RBP13.52□□□□□ -0.24
USP42-206ENST00000479544 NIPA2Q8N8Q9 360 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 SPATC1LQ9H0A9 340 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 SYTL2Q9HCH5 934 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 BPIFA1Q9NP55 256 aa13.52□□□□□ -0.24
USP42-206ENST00000479544 AP2A1O95782 977 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 HOXC6P09630 235 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ZBTB48P10074 688 aaPredicted RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 XPAP23025 273 aaPredicted RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 PTPN3P26045 913 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ELK4P28324 431 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 GRIA2P42262 883 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 PPP3CCP48454 512 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 RPL38P63173 70 aaKnown RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 MAPKAPK3Q16644 382 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 PDCD4Q53EL6 469 aaKnown RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 CMPK2Q5EBM0 449 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ZDHHC17Q8IUH5 632 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 SNX29P2Q8IUI4 249 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 TBC1D21Q8IYX1 336 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms