RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 VPS28Q9UK41 221 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 FBXO10Q9UK96 956 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 PLA2G4CQ9UP65 541 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 SIT1Q9Y3P8 196 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 HYOU1Q9Y4L1 999 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 PCDHA3Q9Y5H8 950 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 SNX10Q9Y5X0 201 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 COL6A3P12111 3177 aa6.29□□□□□ -1.4
SF3B1-209ENST00000479532 PRUNE2Q8WUY3 3088 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 C5orf42Q9H799 3197 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 A0A0U1RQJ8 604 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ZSCAN5CA6NGD5 496 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 FAM72CH0Y354 149 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 I6L893 689 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 APOL1O14791 398 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 POLR3GO15318 223 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 AHCYL1O43865 530 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF189O75820 626 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 NEBLO76041 1014 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CNTN5O94779 1100 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 SRPRAP08240 638 aaKnown RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 INHBBP09529 407 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CISD3P0C7P0 127 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 MYBL2P10244 700 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 EZRP15311 586 aaKnown RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 TCF4P15884 667 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ERCC2P18074 760 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 HLA-FP30511 346 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CD70P32970 193 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CSKP41240 450 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 MASP1P48740 699 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 DNA2P51530 1060 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CLCN5P51795 746 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 NDST2P52849 883 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 PLK1P53350 603 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 MRPS21P82921 87 aaKnown RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 GNA12Q03113 381 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 LMAN2Q12907 356 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 DPYSL3Q14195 570 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CA9Q16790 459 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 DPY19L1Q2PZI1 675 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 PLEKHG6Q3KR16 790 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 FNDC3BQ53EP0 1204 aaKnown RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ALFQ53S48 1182 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ANKRD20A8PQ5CZ79 823 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 TFDP3Q5H9I0 405 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 PITRM1Q5JRX3 1037 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF569Q5MCW4 686 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 EOGTQ5NDL2 527 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 FAM72AQ5TYM5 149 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 MBLAC2Q68D91 279 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 TXNRD3NBQ6F5E7 133 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 FAM72DQ6L9T8 149 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 RETSATQ6NUM9 610 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CYP4V2Q6ZWL3 525 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 FAM72BQ86X60 149 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 LRRC49Q8IUZ0 686 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 BBS5Q8N3I7 341 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 DCAF4L2Q8NA75 395 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 PJA1Q8NG27 643 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ZFAND2BQ8WV99 257 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ATRIPQ8WXE1 791 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 CHFRQ96EP1 664 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 RNF157Q96PX1 679 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 C1QTNF1Q9BXJ1 281 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 GOLPH3Q9H4A6 298 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 LMAN1LQ9HAT1 526 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ATP13A1Q9HD20 1204 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 ELOVL2Q9NXB9 296 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 TBC1D30Q9Y2I9 924 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 GPR55Q9Y2T6 319 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-209ENST00000479532 RAD54BQ9Y620 910 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 RPS6KL1Q9Y6S9 549 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 U3KQE9 123 aa6.28□□□□□ -1.4
SF3B1-209ENST00000479532 hCG_2014768A0A024R1R8 64 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 CXorf51AA0A1B0GTR3 108 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 RASA4BC9J798 803 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 DFFAO00273 331 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 PLD2O14939 933 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 DCLK1O15075 740 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 RASA4O43374 803 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 DLX3O60479 287 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 SYNCRIPO60506 623 aaKnown RBP6.27□□□□□ -1.41
SF3B1-209ENST00000479532 TJP3O95049 919 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 EGFP01133 1207 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 FESP07332 822 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 SNRPB2P08579 225 aaKnown RBP6.27□□□□□ -1.41
SF3B1-209ENST00000479532 DLDP09622 509 aaKnown RBP6.27□□□□□ -1.41
SF3B1-209ENST00000479532 ITIH2P19823 946 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 CD72P21854 359 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 TGM2P21980 687 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 CTSKP43235 329 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 RPS9P46781 194 aaKnown RBP6.27□□□□□ -1.41
SF3B1-209ENST00000479532 ARSEP51690 589 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 SH3BGRP55822 239 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-209ENST00000479532 GFRA1P56159 465 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 GNG11P61952 73 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 ECT2LQ008S8 904 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 DPYSQ14117 519 aa6.27□□□□□ -1.41
SF3B1-209ENST00000479532 STARD3Q14849 445 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms