RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ABL2P42684 1182 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 SLC1A2P43004 574 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 TNFRSF4P43489 277 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 LEPRP48357 1165 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 CCT5P48643 541 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 SUOXP51687 545 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 CLCN5P51795 746 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 GYS2P54840 703 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 ELAVL3Q14576 367 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 FASTKD1Q53R41 847 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF805Q5CZA5 627 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 AARS2Q5JTZ9 985 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 RNF187Q5TA31 235 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 DSG4Q86SJ6 1040 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 ZC3HC1Q86WB0 502 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 CILP2Q8IUL8 1156 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 C4orf33Q8N1A6 199 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 CBARPQ8N350 705 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 BANPQ8N9N5 519 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 OR13C4Q8NGS5 318 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 OR4L1Q8NH43 312 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 SORCS1Q8WY21 1168 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 OR8D1Q8WZ84 308 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 DNASE1L2Q92874 299 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 TBATAQ96M53 351 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 COL25A1Q9BXS0 654 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 C8orf33Q9H7E9 229 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 INTS10Q9NVR2 710 aaKnown RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 POLR3BQ9NW08 1133 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 IL1RAPL1Q9NZN1 696 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 IL17CQ9P0M4 197 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 THAP10Q9P2Z0 257 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 GGT7Q9UJ14 662 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 APPL1Q9UKG1 709 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 TRPM6Q9BX84 2022 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 C1orf232A0A0U1RR37 186 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 HMX2A2RU54 273 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 CCDC162PA2VCL2 907 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 GRXCR2A6NFK2 248 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 CD3EAPO15446 510 aaKnown RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 GLRA3O75311 464 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 GOT2P00505 430 aaKnown RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 AHSGP02765 367 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 GSTA1P08263 222 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 PYGBP11216 843 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 HNRNPLP14866 589 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 TYK2P29597 1187 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 GKP32189 559 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 CRHR1P34998 444 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 MAGEA12P43365 314 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 ARSDP51689 593 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 BMPR2Q13873 1038 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 ZNF234Q14588 700 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 INSCQ1MX18 579 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 FSTL4Q6MZW2 842 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 SERPINA13PQ6UXR4 307 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 SH2D5Q6ZV89 423 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 LYSMD3Q7Z3D4 306 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 PTAR1Q7Z6K3 402 aaPredicted RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 RAVER1Q8IY67 606 aaKnown RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 DCLK2Q8N568 766 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 CHST14Q8NCH0 376 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 TMIEQ8NEW7 156 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 KCNV2Q8TDN2 545 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 DYDC1Q8WWB3 177 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 TSPAN17Q96FV3 270 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 MSANTD3Q96H12 275 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 PPP1R16AQ96I34 528 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 SERAC1Q96JX3 654 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 KLHL32Q96NJ5 620 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 TTC1Q99614 292 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 PHF7Q9BWX1 381 aaPredicted RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 CCDC134Q9H6E4 229 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 RAD18Q9NS91 495 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 SLC17A6Q9P2U8 582 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 DCDC2Q9UHG0 476 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 FAM50BQ9Y247 325 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 ANKRD6Q9Y2G4 727 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 KCTD3Q9Y597 815 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 WASF2Q9Y6W5 498 aa12.83□□□□□ -0.36
VPS13D-205ENST00000473099 SPTBN5Q9NRC6 3674 aaKnown RBP12.83□□□□□ -0.36
VPS13D-205ENST00000473099 UPK3BL1B0FP48 263 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 UPK3BL2E5RIL1 263 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 H3BQ06 376 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-205ENST00000473099 GOLGA8TH3BQL2 631 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TPP1O14773 563 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 SPAG7O75391 227 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 LEFTY1O75610 366 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 ALDOAP04075 364 aaKnown RBP12.82□□□□□ -0.36
VPS13D-205ENST00000473099 GLULP15104 373 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 CREB1P16220 341 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 CTPS1P17812 591 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 KCNA5P22460 613 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 XPAP23025 273 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-205ENST00000473099 PMLP29590 882 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 HNF1BP35680 557 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TTPAP49638 278 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 SLC12A2P55011 1212 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 GNGT1P63211 74 aa12.82□□□□□ -0.36
VPS13D-205ENST00000473099 TMPRSS15P98073 1019 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms