RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CYP2A6P11509 494 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 CTPS1P17812 591 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 NFKBIAP25963 317 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GALNT2Q10471 571 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 PAFAH1B3Q15102 231 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 PDK2Q15119 407 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 PTPRRQ15256 657 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 ASTE1Q2TB18 679 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 RALGPS1Q5JS13 557 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 ARMC12Q5T9G4 340 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GKN2Q86XP6 184 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 LRRC49Q8IUZ0 686 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 VSTM4Q8IW00 320 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 TEX26Q8N6G2 289 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 ARL10Q8N8L6 244 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 ZNF248Q8NDW4 579 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 OR56A4Q8NGH8 313 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 LRRN4Q8WUT4 740 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 SCG3Q8WXD2 468 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 NAT6Q93015 286 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 COQ10AQ96MF6 247 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 CHP1Q99653 195 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 LGR4Q9BXB1 951 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 WDR26Q9H7D7 661 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 FGF22Q9HCT0 170 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 ABHD10Q9NUJ1 306 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 SPTLC3Q9NUV7 552 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GOLGA6AQ9NYA3 693 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 PADI4Q9UM07 663 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GPR34Q9UPC5 381 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 TEX51A0A1B0GUA7 166 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 NPIPB15A6NHN6 443 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 CASC3O15234 703 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 MFAP3LO75121 409 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 DXOO77932 396 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 TMEM253P0C7T8 217 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 LHCGRP22888 699 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 KELP23276 732 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 LSSP48449 732 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 PCBP4P57723 403 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 DSC2Q02487 901 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 ARHGEF7Q14155 803 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 IFI16Q16666 785 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 TIGD7Q6NT04 549 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 PNCKQ6P2M8 343 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 RBM44Q6ZP01 1051 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 USP45Q70EL2 814 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 TSPAN33Q86UF1 283 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 MAP7D3Q8IWC1 876 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 ZNF843Q8N446 348 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 SPOCK2Q92563 424 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 ZNF578Q96N58 590 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 RBM15Q96T37 977 aaKnown RBP eCLIP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 CCDC3Q9BQI4 270 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 POLR1EQ9GZS1 481 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 SUDS3Q9H7L9 328 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 POLR1BQ9H9Y6 1135 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 CPNE5Q9HCH3 593 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 CYP4F12Q9HCS2 524 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 LCMT1Q9UIC8 334 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 HELZ2Q9BYK8 2649 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 CFAP46Q8IYW2 2715 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 MGAQ8IWI9 3026 aa15.73■□□□□ 0.11
CCDC88B-205ENST00000472524 A0A0U1RQS6 177 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 A0A1W2PNU3 283 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 PDHA1P08559 390 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 MAN1A1P33908 653 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 TRIM23P36406 574 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 ETV3P41162 512 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 GBE1Q04446 702 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 ISXQ2M1V0 245 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 C3orf38Q5JPI3 329 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 LVRNQ6Q4G3 990 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 HSD11B1LQ7Z5J1 315 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 TAF8Q7Z7C8 310 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 HEATR4Q86WZ0 1026 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 LSMEM2Q8N112 164 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 PQLC3Q8N755 202 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 LSM14AQ8ND56 463 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 TPCN2Q8NHX9 752 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 SLC35G2Q8TBE7 412 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 RAPGEF5Q92565 580 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 MAML1Q92585 1016 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 CCDC74AQ96AQ1 378 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 FAF2Q96CS3 445 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 DTD2Q96FN9 168 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 SCRN2Q96FV2 425 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 CCDC42Q96M95 316 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 SMIM14Q96QK8 99 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 NHEJ1Q9H9Q4 299 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 ASCL3Q9NQ33 180 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 PHPT1Q9NRX4 125 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 RBM22Q9NW64 420 aaKnown RBP eCLIP15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 DGKBQ9Y6T7 804 aa15.72■□□□□ 0.11
CCDC88B-205ENST00000472524 SCN8AQ9UQD0 1980 aa15.71■□□□□ 0.11
CCDC88B-205ENST00000472524 MATN3O15232 486 aa15.71■□□□□ 0.11
CCDC88B-205ENST00000472524 HOXC4P09017 264 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-205ENST00000472524 MYCLP1P12525 358 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-205ENST00000472524 KDELR1P24390 212 aa15.71■□□□□ 0.11
CCDC88B-205ENST00000472524 CCNCP24863 283 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms