RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BTBD19C9JJ37 291 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 GPR32O75388 356 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CABYRO75952 493 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 B3GALT4O96024 378 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 GSNP06396 782 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 IL7RP16871 459 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CAPN3P20807 821 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CD52P31358 61 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 MASP1P48740 699 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 HPCAP84074 193 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 NFYCQ13952 458 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ARMC12Q5T9G4 340 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 UGT3A1Q6NUS8 523 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 KLHL35Q6PF15 583 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 LINGO4Q6UY18 593 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 TLK2Q86UE8 772 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ADAMTS10Q9H324 1103 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 INTS7Q9NVH2 962 aaKnown RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 WDR70Q9NW82 654 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 IGSF9Q9P2J2 1179 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ST3GAL5Q9UNP4 418 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 INVSQ9Y283 1065 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CDC7O00311 574 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 PIRO00625 290 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 NME4O00746 187 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CLOCKO15516 846 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 HTRA2O43464 458 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 DGKEP52429 567 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CTBSQ01459 385 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 MFSD10Q14728 455 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 TSNQ15631 228 aaKnown RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 GNASQ5JWF2 1037 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 C16orf59Q7L2K0 433 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ZNF410Q86VK4 478 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 TMEM102Q8N9M5 508 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 GIPC2Q8TF65 315 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 HSFY1Q96LI6 401 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 RPRD1AQ96P16 312 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 C11orf84Q9BUA3 381 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 UPF3AQ9H1J1 476 aaKnown RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 ZFP14Q9HCL3 533 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 RAD54BQ9Y620 910 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 NRCAMQ92823 1304 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 A0A0G2JLL6 359 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 HACD1B0YJ81 288 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 OR1I1O60431 355 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 SLC25A27O95847 323 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ZNF26P17031 533 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 CDH2P19022 906 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 KPNA1P52294 538 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 UFM1P61960 85 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 BFSP2Q13515 415 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 DGCR6Q14129 220 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 PCID2Q5JVF3 399 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 CCDC81Q6ZN84 652 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 PIWIL3Q7Z3Z3 882 aaKnown RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 PRRT2Q7Z6L0 340 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 OR10T2Q8NGX3 314 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 PPTC7Q8NI37 304 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 SKA2Q8WVK7 121 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 FIG4Q92562 907 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 MYEOVQ96EZ4 313 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 SEMA3CQ99985 751 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 APOL5Q9BWW9 433 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 TDRD1Q9BXT4 1180 aaKnown RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 SPAG4Q9NPE6 437 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 FLRT1Q9NZU1 646 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 C6orf203Q9P0P8 240 aaPredicted RBP8.66□□□□□ -1.02
USP40-203ENST00000427112 ZNHIT2Q9UHR6 403 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 MYRFQ9Y2G1 1151 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 ASB1Q9Y576 335 aa8.66□□□□□ -1.02
USP40-203ENST00000427112 COL2A1P02458 1487 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 ZFC3H1O60293 1989 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 NPEPPSL1A6NEC2 478 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 A8MU76 341 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 ACOT8O14734 319 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 TLR5O60602 858 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 XYLBO75191 536 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 BCAS2O75934 225 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 IPO13O94829 963 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 DIRAS1O95057 198 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 ATE1O95260 518 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 THP07101 528 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 MLNP12872 115 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 RGS2P41220 211 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 GDF5P43026 501 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 MAGEA6P43360 314 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 PHEXP78562 749 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 HNRNPDQ14103 355 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 C16orf87Q6PH81 154 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 TAS2R42Q7RTR8 314 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 GPR142Q7Z601 462 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 STK32CQ86UX6 486 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 RAVER1Q8IY67 606 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 CLEC4FQ8N1N0 589 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CRYBG2Q8N1P7 616 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 GIPC3Q8TF64 312 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 MRGPRX2Q96LB1 330 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 NAT9Q9BTE0 207 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 TLR9Q9NR96 1032 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms