RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PRSS16Q9NQE7 514 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 CTNNAL1Q9UBT7 734 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 LGALS13Q9UHV8 139 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 CA14Q9ULX7 337 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 NDRG2Q9UN36 371 aaKnown RBP17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 KCTD3Q9Y597 815 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 CXorf49A8MYA2 514 aaPredicted RBP17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 AURKAO14965 403 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 RNF40O75150 1001 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 PIAS1O75925 651 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 HOXB2P14652 356 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 VIPR1P32241 457 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ZP2Q05996 745 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ENPP2Q13822 863 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 RASA2Q15283 850 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ZNF470Q6ECI4 717 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 NEPROQ6NW34 567 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ADGRD1Q6QNK2 874 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 LMNTD2Q8IXW0 634 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 KRT222Q8N1A0 295 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 TTC30BQ8N4P2 665 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 OR13J1Q8NGT2 312 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ERLEC1Q96DZ1 483 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 FAM122AQ96E09 287 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 LYSMD1Q96S90 227 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 MFSD1Q9H3U5 465 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 SMYD2Q9NRG4 433 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 B4GALT6Q9UBX8 382 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 ZNF180Q9UJW8 692 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 PPM1HQ9ULR3 514 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 FNDC3AQ9Y2H6 1198 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 MRPS17Q9Y2R5 130 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 PPIL1Q9Y3C6 166 aa17.14■□□□□ 0.33
CCDC28B-202ENST00000421922 NPIPB15A6NHN6 443 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 A8MX80 341 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GOLGA8TH3BQL2 631 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PFDN6O15212 129 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SYF2O95926 243 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ADH1BP00325 375 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ZNF30P17039 623 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CNTFP26441 200 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 OAS2P29728 719 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 HMGCLP35914 325 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GP5P40197 560 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SUOXP51687 545 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PRKCQQ04759 706 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ACVR1Q04771 509 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CCDC15Q0P6D6 951 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ELP6Q0PNE2 266 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CAMK2GQ13555 558 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 HSF5Q4G112 596 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 FASTKD1Q53R41 847 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 LRRC73Q5JTD7 316 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 EOGTQ5NDL2 527 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ZNF776Q68DI1 518 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 KCTD16Q68DU8 428 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 MRNIPQ6NTE8 343 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PARS2Q7L3T8 475 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PTAR1Q7Z6K3 402 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 STRA8Q7Z7C7 330 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SDCCAG8Q86SQ7 713 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 DCAKDQ8WVC6 231 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 EZH1Q92800 747 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ARL8AQ96BM9 186 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SHDQ96IW2 340 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 TBATAQ96M53 351 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 MCCC1Q96RQ3 725 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 FAM129BQ96TA1 746 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 BPIFA1Q9NP55 256 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PCDH12Q9NPG4 1184 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ARHGEF3Q9NR81 526 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CATSPERZQ9NTU4 200 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PKD2L2Q9NZM6 624 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 HCN2Q9UL51 889 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 NOVA2Q9UNW9 492 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 H3BQF6 201 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CCL22O00626 93 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 NEMP1O14524 444 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CLDN7O95471 211 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GOT2P00505 430 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 TIMP2P16035 220 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GCAP28676 217 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SPRP35270 261 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 NEK3P51956 506 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CSE1LP55060 971 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 LRRC32Q14392 662 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PTPRCAPQ14761 206 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 TTMPQ5BVD1 217 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 TEDDM1Q5T9Z0 273 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GRTP1Q5TC63 336 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 ZDHHC20Q5W0Z9 365 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 LRRC66Q68CR7 880 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CRTC1Q6UUV9 634 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 PACS1Q6VY07 963 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 CACUL1Q86Y37 369 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 IL17RCQ8NAC3 791 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 TXNDC5Q8NBS9 432 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 OR4L1Q8NH43 312 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 MTBPQ96DY7 904 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms