RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 NHEJ1Q9H9Q4 299 aaPredicted RBP19.31■□□□□ 0.68
SMARCB1-204ENST00000407422 GPR34Q9UPC5 381 aa19.31■□□□□ 0.68
SMARCB1-204ENST00000407422 MGAQ8IWI9 3026 aa19.31■□□□□ 0.68
SMARCB1-204ENST00000407422 UNC13CQ8NB66 2214 aa19.31■□□□□ 0.68
SMARCB1-204ENST00000407422 MATN3O15232 486 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 HOXB3P14651 431 aaPredicted RBP19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 MAN1A1P33908 653 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 DSC2Q02487 901 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 SLC10A2Q12908 348 aaPredicted RBP19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 ZFYVE27Q5T4F4 411 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 LVRNQ6Q4G3 990 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 MAP7D3Q8IWC1 876 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 ARL10Q8N8L6 244 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 SCG3Q8WXD2 468 aaKnown RBP19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 NAT6Q93015 286 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 MCCC1Q96RQ3 725 aaPredicted RBP19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 CCDC3Q9BQI4 270 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 POLR1EQ9GZS1 481 aaKnown RBP19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 RABGEF1Q9UJ41 708 aa19.3■□□□□ 0.68
SMARCB1-204ENST00000407422 FZD6O60353 706 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 HOXC4P09017 264 aaPredicted RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 CYP2A6P11509 494 aaPredicted RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 KDELR1P24390 212 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 IFI16Q16666 785 aaKnown RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TSR1Q2NL82 804 aaKnown RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 Q6ZVL8 140 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 GKN2Q86XP6 184 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 SFTPA2Q8IWL1 248 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 FGF11Q92914 225 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 DTD2Q96FN9 168 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TSGA13Q96PP4 275 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TMEM168Q9H0V1 697 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 CYP4F12Q9HCS2 524 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 RBM22Q9NW64 420 aaKnown RBP eCLIP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 PPIL1Q9Y3C6 166 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TTLL3Q9Y4R7 772 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 A0A1W2PNU3 283 aaPredicted RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TPM1P09493 284 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 CCNCP24863 283 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 GABREP78334 506 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TBC1D25Q3MII6 688 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 FAM182AQ5T1J6 154 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 ALG1LQ6GMV1 187 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TIGD7Q6NT04 549 aaPredicted RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 RBM44Q6ZP01 1051 aaKnown RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 RFLNAQ6ZTI6 216 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 USP45Q70EL2 814 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 SDR16C5Q8N3Y7 309 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 CCL4L1Q8NHW4 92 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 TPCN2Q8NHX9 752 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 SNIP1Q8TAD8 396 aaKnown RBP19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 ATXN7L3BQ96GX2 97 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 CCDC42Q96M95 316 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 DTLQ9NZJ0 730 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 LCMT1Q9UIC8 334 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 MOSPD1Q9UJG1 213 aa19.29■□□□□ 0.68
SMARCB1-204ENST00000407422 ATRXP46100 2492 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 TNFRSF10CO14798 259 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 HLA-DQB2P05538 268 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 CCNB1P14635 433 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 KELP23276 732 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 ACTN2P35609 894 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 NIPAL4Q0D2K0 466 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 ARHGEF7Q14155 803 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 TAF8Q7Z7C8 310 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 HEATR4Q86WZ0 1026 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 FATE1Q969F0 183 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 CCDC74AQ96AQ1 378 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 RNF157Q96PX1 679 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 TEX101Q9BY14 249 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 ENTPD2Q9Y5L3 495 aa19.28■□□□□ 0.68
SMARCB1-204ENST00000407422 LRRD1A4D1F6 860 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 GOLGA6CA6NDK9 693 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 GOLGA6BA6NDN3 693 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 FUCA1P04066 466 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 GOLGA6DP0CG33 693 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 MYCLP1P12525 358 aaPredicted RBP19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 NFKBIAP25963 317 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 ABCG1P45844 678 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 LSSP48449 732 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 PDX1P52945 283 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 LRRC66Q68CR7 880 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 TECPR1Q7Z6L1 1165 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 CCNYQ8ND76 341 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 ARRDC2Q8TBH0 407 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 PTCD2Q8WV60 388 aaKnown RBP19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 LGMNQ99538 433 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 SUDS3Q9H7L9 328 aaPredicted RBP19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 SYNDIG1Q9H7V2 258 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 POLR1BQ9H9Y6 1135 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 GOLGA6AQ9NYA3 693 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 CD84Q9UIB8 345 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 SATB2Q9UPW6 733 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 CHKBQ9Y259 395 aa19.27■□□□□ 0.68
SMARCB1-204ENST00000407422 PRSS38A1L453 326 aa19.26■□□□□ 0.67
SMARCB1-204ENST00000407422 C3orf70A6NLC5 250 aaPredicted RBP19.26■□□□□ 0.67
SMARCB1-204ENST00000407422 PSMD11O00231 422 aa19.26■□□□□ 0.67
SMARCB1-204ENST00000407422 TCEA3O75764 348 aa19.26■□□□□ 0.67
SMARCB1-204ENST00000407422 CEACAM5P06731 702 aa19.26■□□□□ 0.67
SMARCB1-204ENST00000407422 MX2P20592 715 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms