RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HNRNPLP14866 589 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TPSB2P20231 275 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PSEN1P49768 467 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 AIF1P55008 147 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 DLG1Q12959 904 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 USP4Q13107 963 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SPIDRQ14159 915 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TPSAB1Q15661 275 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 C1orf189Q5VU69 101 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 HLA-DQA1Q5Y7H0 255 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 BHLHB9Q6PI77 547 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 APTXQ7Z2E3 356 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PEG10Q86TG7 708 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ECHDC2Q86YB7 292 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 EEF1AKMT1Q8WVE0 214 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ITCHQ96J02 903 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SEMA3CQ99985 751 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ERVK-5Q9HDB9 667 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PHF11Q9UIL8 331 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TRAF6Q9Y4K3 522 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PCDHB12Q9Y5F1 795 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PCDHGA10Q9Y5H3 936 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 RNF225M0QZC1 329 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 FFAR3O14843 346 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 GPR42O15529 346 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 OR6A2O95222 327 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 UGT2B15P54855 530 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 GMFBP60983 142 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 CAPSQ13938 189 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 IQSEC1Q6DN90 963 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 LEMD2Q8NC56 503 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 FAIM2Q9BWQ8 316 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 PCDH18Q9HCL0 1135 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 VWA7Q9Y334 891 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 FADS3Q9Y5Q0 445 aa10.27□□□□□ -0.76
LIMCH1-203ENST00000396595 ATP6AP2A0A1C7CYW4 349 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 H3BNX3 289 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 ATP6AP2O75787 350 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 NADKO95544 446 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SERPINA1P01009 418 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SMCO1Q147U7 214 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 RAP1GAP2Q684P5 730 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 TRAPPC5Q8IUR0 188 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 P2RX7Q99572 595 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 LHX5Q9H2C1 402 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 DNAAF2Q9NVR5 837 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 PTGFRNQ9P2B2 879 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SQORQ9Y6N5 450 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 ADGRB2O60241 1585 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 A0A0X1KG70 313 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 KPNA3O00505 521 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 BUD23O43709 281 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC22A3O75751 556 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 MTA2O94776 668 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 APOC1P02654 83 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 FGF1P05230 155 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 AKR1A1P14550 325 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 TSPAN8P19075 237 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC9A3P48764 834 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 RHBDL3P58872 404 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 CTBP1Q13363 440 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 ITGA7Q13683 1181 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 PSMD5Q16401 504 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SWI5Q1ZZU3 235 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 CELF3Q5SZQ8 465 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 BICRALQ6AI39 1079 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 CMC1Q7Z7K0 106 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 RBM15BQ8NDT2 890 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 ELMO1Q92556 727 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 CRISPLD1Q9H336 500 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 RAB26Q9ULW5 256 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 VPS4AQ9UN37 437 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 PTCH2Q9Y6C5 1203 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 C2P06681 752 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 MMP8P22894 467 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 RBM20Q5T481 1227 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 C6orf183Q5T699 404 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 HGSNATQ68CP4 663 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 ZC3H7AQ8IWR0 971 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 NKD2Q969F2 451 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 MRIQ9BWK5 157 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 MUC13Q9H3R2 512 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 TRMT13Q9NUP7 481 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 TOR4AQ9NXH8 423 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 EGFL7Q9UHF1 273 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 GPN3Q9UHW5 284 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SSR3Q9UNL2 185 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 TMED5Q9Y3A6 229 aa10.27□□□□□ -0.77
LIMCH1-203ENST00000396595 SH3D21A4FU49 640 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 AVILO75366 819 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LYPLA2O95372 231 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 NR2F6P10588 404 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LPOP22079 712 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 ADORA2AP29274 412 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SNRPD1P62314 119 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PABPC1LQ4VXU2 614 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LIN52Q52LA3 116 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LPCAT4Q643R3 524 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 C15orf52Q6ZUT6 534 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 C16orf59Q7L2K0 433 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms