RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TTC24A2A3L6 582 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 FXYD1O00168 92 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ANGPT2O15123 496 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ARPC2O15144 300 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 XPOTO43592 962 aaKnown RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 SNAP91O60641 907 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ZBTB11O95625 1053 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 GPIP06744 558 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 OCM2P0CE71 109 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 OCMP0CE72 109 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 FCGR1AP12314 374 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 CAPN3P20807 821 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 UGT1A1P22309 533 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 UGT1A4P22310 534 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 UGT1A3P35503 534 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 UGT1A5P35504 534 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ZNF678Q5SXM1 525 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 TAPT1Q6NXT6 567 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 TRPV3Q8NET8 790 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 HDAC10Q969S8 669 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 L3HYPDHQ96EM0 354 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 TSPAN17Q96FV3 270 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ZNF419Q96HQ0 510 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 SEZ6LQ9BYH1 1024 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 ENTPD7Q9NQZ7 604 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 SMPD3Q9NY59 655 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-202ENST00000375299 TMEM9Q9P0T7 183 aa21.18■□□□□ 0.98
UPF3A-202ENST00000375299 F9P00740 461 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 GFAPP14136 432 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 MAGEA10P43363 369 aaPredicted RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 CHRNA4P43681 627 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 SLC14A2Q15849 920 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 MOGQ16653 247 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 VPS26BQ4G0F5 336 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 PM20D1Q6GTS8 502 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 ANKRD26P1Q6NSI1 321 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 PPTC7Q8NI37 304 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 ANKRD49Q8WVL7 239 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 UBXN10Q96LJ8 280 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 IL12RB2Q99665 862 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 PRKD2Q9BZL6 878 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 CNGB3Q9NQW8 809 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 FUOMA2VDF0 154 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 H3BRB1 525 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 NOL3O60936 208 aaKnown RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 DDNO94850 711 aaPredicted RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 CXCR3P49682 368 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 BNIP3Q12983 259 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 CAPRIN1Q14444 709 aaKnown RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 UGT3A2Q3SY77 523 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 DCLRE1AQ6PJP8 1040 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 GPRIN1Q7Z2K8 1008 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 CTU1Q7Z7A3 348 aaKnown RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 ATPAF2Q8N5M1 289 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 NLGN2Q8NFZ4 835 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 TANKQ92844 425 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 TUT1Q9H6E5 874 aaKnown RBP21.17■□□□□ 0.98
UPF3A-202ENST00000375299 TMEM165Q9HC07 324 aa21.17■□□□□ 0.98
UPF3A-202ENST00000375299 USP17L7P0C7H9 530 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 SLC6A2P23975 617 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 LILRA4P59901 499 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 GRSF1Q12849 480 aaKnown RBP eCLIP21.16■□□□□ 0.98
UPF3A-202ENST00000375299 UNC50Q53HI1 259 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 CYBRD1Q53TN4 286 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 NANOGP8Q6NSW7 305 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 DDIASQ8IXT1 998 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 CLYBLQ8N0X4 340 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 CENPSQ8N2Z9 138 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 MIER2Q8N344 545 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 CNDP2Q96KP4 475 aaKnown RBP21.16■□□□□ 0.98
UPF3A-202ENST00000375299 TUBA1CQ9BQE3 449 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 FSD1LQ9BXM9 530 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 YTHDF1Q9BYJ9 559 aaKnown RBP21.16■□□□□ 0.98
UPF3A-202ENST00000375299 PFDN4Q9NQP4 134 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 ADARB2Q9NS39 739 aaKnown RBP21.16■□□□□ 0.98
UPF3A-202ENST00000375299 GID8Q9NWU2 228 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 PMPCBO75439 489 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 IDO1P14902 403 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 LEPRP48357 1165 aaKnown RBP21.16■□□□□ 0.98
UPF3A-202ENST00000375299 NEDD8Q15843 81 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 HECTD2Q5U5R9 776 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 KIAA0319Q5VV43 1072 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 OGFOD2Q6N063 350 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 C16orf87Q6PH81 154 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 SGIP1Q9BQI5 828 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 ALG9Q9H6U8 611 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 PALMDQ9NP74 551 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 PKD2L2Q9NZM6 624 aa21.16■□□□□ 0.98
UPF3A-202ENST00000375299 ZFC3H1O60293 1989 aaKnown RBP21.15■□□□□ 0.98
UPF3A-202ENST00000375299 DYTNA2CJ06 578 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 RFC2P35250 354 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 RPS9P46781 194 aaKnown RBP21.15■□□□□ 0.98
UPF3A-202ENST00000375299 HLCSP50747 726 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 TNK2Q07912 1038 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 FAM117BQ6P1L5 589 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 CALML6Q8TD86 181 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 EDEM1Q92611 657 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 LRRC58Q96CX6 371 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 ATXN3LQ9H3M9 355 aa21.15■□□□□ 0.98
UPF3A-202ENST00000375299 INIPQ9NRY2 104 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms