RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 COQ9O75208 318 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 ZBTB11O95625 1053 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 OCM2P0CE71 109 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 OCMP0CE72 109 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 NCAM1P13591 858 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CPB1P15086 417 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CD247P20963 164 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MYF6P23409 242 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 FASP25445 335 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PSMA4P25789 261 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 YAP1P46937 504 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MAP3K7CLP57077 242 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CAPRIN1Q14444 709 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 RAB39AQ14964 217 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 GEN1Q17RS7 908 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TRIM71Q2Q1W2 868 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 OGFOD2Q6N063 350 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 IFNEQ86WN2 208 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 B3GALNT2Q8NCR0 500 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PPHLN1Q8NEY8 458 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 NT5C3BQ969T7 300 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 VPS50Q96JG6 964 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 COX4I2Q96KJ9 171 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TBL1YQ9BQ87 522 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TRIM8Q9BZR9 551 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 NXF3Q9H4D5 531 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CCM2LQ9NUG4 571 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 ARMC1Q9NVT9 282 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TRAF6Q9Y4K3 522 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PCDHGA4Q9Y5G9 962 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 A0A087X1B8 175 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 A0A1W2PQ45 241 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 A0A1W2PQY0 241 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 DFFAO00273 331 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 NME4O00746 187 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 NOL3O60936 208 aaKnown RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 SUPT7LO94864 414 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 UGT1A1P22309 533 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 UGT1A4P22310 534 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 UGT1A3P35503 534 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 UGT1A5P35504 534 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 DNAJB13P59910 316 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 PSMD5Q16401 504 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 RETREG3Q86VR2 466 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 EXT2Q93063 718 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 TNIP3Q96KP6 325 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 DUSP16Q9BY84 665 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 ULBP1Q9BZM6 244 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 SOX17Q9H6I2 414 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 SLC38A7Q9NVC3 462 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 SELENONQ9NZV5 590 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 PTBP2Q9UKA9 531 aaKnown RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 FBXO5Q9UKT4 447 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 PMPCBO75439 489 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 RECQL4O94761 1208 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 NPR3P17342 541 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 GALNT2Q10471 571 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 VPS26BQ4G0F5 336 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 BTBD8Q5XKL5 378 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 GRAMD4Q6IC98 578 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 RWDD4Q6NW29 188 aaKnown RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 MFSD2AQ8NA29 543 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 PLEKHA8Q96JA3 519 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 VAT1Q99536 393 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 TRIM15Q9C019 465 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-203ENST00000374877 GIMAP2Q9UG22 337 aa11.11□□□□□ -0.63
CCDC40-203ENST00000374877 A0A0J9YYE9 177 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 YJEFN3A6XGL0 299 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ZNF701M0R085 212 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 AP3B1O00203 1094 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 EI24O14681 340 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 HUS1O60921 280 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 PORP16435 677 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ARNTP27540 789 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 OXTRP30559 389 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ZNF829Q3KNS6 432 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 TECRLQ5HYJ1 363 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 INTS11Q5TA45 600 aaKnown RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 KCTD8Q6ZWB6 473 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 FUNDC1Q8IVP5 155 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 RPL10LQ96L21 214 aaKnown RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 C9orf16Q9BUW7 83 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 STARD7Q9NQZ5 370 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 IGSF5Q9NSI5 407 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 OR12D3Q9UGF7 316 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 OGDHLQ9ULD0 1010 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 PIN4Q9Y237 131 aaKnown RBP11.1□□□□□ -0.63
CCDC40-203ENST00000374877 COQ6Q9Y2Z9 468 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 FADS3Q9Y5Q0 445 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 J3QRK9 145 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 CHRNA1P02708 482 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 PLCL1Q15111 1095 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ZBTB6Q15916 424 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ARL13BQ3SXY8 428 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 UBXN11Q5T124 520 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 AGAP9Q5VTM2 703 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ABRAXAS1Q6UWZ7 409 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 ARHGAP36Q6ZRI8 547 aa11.1□□□□□ -0.63
CCDC40-203ENST00000374877 FAM35AQ86V20 835 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms