RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC36A3Q495N2 470 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 TMEM26Q6ZUK4 368 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 PTERQ96BW5 349 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 COG8Q96MW5 612 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 TRIM15Q9C019 465 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 NAA50Q9GZZ1 169 aaKnown RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 HIPK3Q9H422 1215 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 RPF2Q9H7B2 306 aaKnown RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 DNAJC15Q9Y5T4 150 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 LTBP3Q9NS15 1303 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 RBM47A0AV96 593 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 AQP12BA6NM10 295 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 BBIP1A8MTZ0 92 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 PIP5K1BO14986 540 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 ANGPT2O15123 496 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 SIX3O95343 332 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 SNAI1O95863 264 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 SMIM10L2AP0DMW4 78 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 SMIM10L2BP0DMW5 78 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 MTHFD1P11586 935 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 CD247P20963 164 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 FOXA1P55317 472 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 SH3BP2P78314 561 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 ZNF33AQ06730 810 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 GALNT1Q10472 559 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 GEN1Q17RS7 908 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 ZBTB46Q86UZ6 589 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 CCDC117Q8IWD4 279 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 AQP12AQ8IXF9 295 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 KCNA7Q96RP8 456 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 POLR1BQ9H9Y6 1135 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 PTBP2Q9UKA9 531 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 OR51F1A6NGY5 319 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 CLOCKO15516 846 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 SLC4A1P02730 911 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 IL10P22301 178 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 LEPRP48357 1165 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 CCT8P50990 548 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 APLP1P51693 650 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 NAA20P61599 178 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 RAB39AQ14964 217 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 AARS2Q5JTZ9 985 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 LCN8Q6JVE9 175 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 FASTKD5Q7L8L6 764 aaKnown RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 CHST15Q7LFX5 561 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 LRRC43Q8N309 656 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 RYBPQ8N488 228 aaPredicted RBP16.4■□□□□ 0.22
SDC4-201ENST00000372733 OR52K2Q8NGK3 314 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 GIPC3Q8TF64 312 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 HDAC10Q969S8 669 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 TSPAN17Q96FV3 270 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 TRMOQ9BU70 441 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 C9orf16Q9BUW7 83 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 PRKD2Q9BZL6 878 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 CDH7Q9ULB5 785 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 ZNF711Q9Y462 761 aa16.4■□□□□ 0.22
SDC4-201ENST00000372733 TRIM64A6NGJ6 449 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 ACOX3O15254 700 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MT-ND1P03886 318 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 SLC6A2P23975 617 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 YAP1P46937 504 aaKnown RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 FGD3Q5JSP0 725 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 ISCA2Q86U28 154 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 IFNEQ86WN2 208 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 DDIASQ8IXT1 998 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 OR13J1Q8NGT2 312 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 ADAMTS16Q8TE57 1224 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 SEPT8Q92599 483 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 PPP1R14BQ96C90 147 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 L3HYPDHQ96EM0 354 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MYRFLQ96LU7 910 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MARCH4Q9P2E8 410 aaPredicted RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 KCNH4Q9UQ05 1017 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 FADS3Q9Y5Q0 445 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 RRN3P2A6NIE6 340 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 ZNF701M0R085 212 aaPredicted RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 INPP4BO15327 924 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MSI1O43347 362 aaKnown RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 HSD17B1P14061 328 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 TPP2P29144 1249 aaPredicted RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 ARSDP51689 593 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MAPK10P53779 464 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 SLC14A2Q15849 920 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 XKR5Q6UX68 686 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 MIER2Q8N344 545 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 PTGR2Q8N8N7 351 aaPredicted RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 OR6P1Q8NGX9 317 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 TWIST2Q8WVJ9 160 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 THAP11Q96EK4 314 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 CENPNQ96H22 339 aaPredicted RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 NSUN5Q96P11 429 aaKnown RBP16.39■□□□□ 0.21
SDC4-201ENST00000372733 TBC1D13Q9NVG8 400 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 ACTR3BQ9P1U1 418 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 BTRCQ9Y297 605 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 VWA7Q9Y334 891 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 NDUFAF1Q9Y375 327 aa16.39■□□□□ 0.21
SDC4-201ENST00000372733 PAGE1O75459 146 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CDK14O94921 469 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 RASAL1O95294 804 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 NCK1P16333 377 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms