RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF37AP17032 561 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MPSTP25325 297 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MSX2P35548 267 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 TRAP1Q12931 704 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 EML3Q32P44 896 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 TAPT1Q6NXT6 567 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 XYLT1Q86Y38 959 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 RBFAQ8N0V3 343 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 OR2T12Q8NG77 320 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 TLCD1Q96CP7 247 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 NPAS2Q99743 824 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 TRIM8Q9BZR9 551 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PCDH12Q9NPG4 1184 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 C8orf4Q9NR00 106 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ABCB10Q9NRK6 738 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LGALS13Q9UHV8 139 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ZNF180Q9UJW8 692 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LYVE1Q9Y5Y7 322 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SLC15A5A6NIM6 579 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SMAD3P84022 425 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 NDUFA5Q16718 116 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 TRIM40Q6P9F5 258 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 DCLRE1AQ6PJP8 1040 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 DENND1CQ8IV53 801 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 C12orf50Q8NA57 414 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 S100ZQ8WXG8 99 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PIK3R5Q8WYR1 880 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 NELL1Q92832 810 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 MRPL45Q9BRJ2 306 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 OSBPL7Q9BZF2 842 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FBXO10Q9UK96 956 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ST3GAL5Q9UNP4 418 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 A0A0J9YYE9 177 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 C5orf60A6NFR6 353 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 CAPN8A6NHC0 703 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PRMT5O14744 637 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 LIN7AO14910 233 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 IPO13O94829 963 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FTH1P02794 183 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ZBTB48P10074 688 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 EPORP19235 508 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 TLX1P31314 330 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 STAT5AP42229 794 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 CDK9P50750 372 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FSTL1Q12841 308 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 HSDL1Q3SXM5 330 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FNDC3BQ53EP0 1204 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SLC26A9Q7LBE3 791 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PROSER1Q86XN7 944 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 HPS6Q86YV9 775 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 IZUMO1Q8IYV9 350 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 GRIN3AQ8TCU5 1115 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ADI1Q9BV57 179 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 MRPL39Q9NYK5 338 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 POLR1DQ9Y2S0 133 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 AGPSO00116 658 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 TAF4O00268 1085 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 DHX15O43143 795 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FARP2O94887 1054 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 HADHBP55084 474 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 COPZ1P61923 177 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 RNASEH2BQ5TBB1 312 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 IKBIPQ70UQ0 350 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 TDRPQ86YL5 185 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 POMGNT2Q8NAT1 580 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 LEMD2Q8NC56 503 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 DPF3Q92784 378 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ITCHQ96J02 903 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 KLHL5Q96PQ7 755 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SSU72Q9NP77 194 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 FAM105AQ9NUU6 356 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PCDHGC3Q9UN70 934 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SLC9A8Q9Y2E8 581 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ARIH1Q9Y4X5 557 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 H7C0S8 307 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PAGE1O75459 146 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ETS2P15036 469 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 JAM2P57087 298 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 BIKQ13323 160 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 DLG2Q15700 870 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 ZSWIM7Q19AV6 140 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 C9orf57Q5W0N0 161 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 LPCAT4Q643R3 524 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 MZT2AQ6P582 158 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 HJURPQ8NCD3 748 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 PPP1R16AQ96I34 528 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 COQ7Q99807 217 aa11.44□□□□□ -0.58
PTPRF-203ENST00000372407 NXF3Q9H4D5 531 aaKnown RBP11.44□□□□□ -0.58
PTPRF-203ENST00000372407 SCAMP3O14828 347 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CBFA2T3O75081 653 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 NUDT14O95848 222 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 NR2F6P10588 404 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 NR2F1P10589 423 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 SEMA5AQ13591 1074 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 DPYSQ14117 519 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 FASTKD3Q14CZ7 662 aaKnown RBP11.43□□□□□ -0.58
PTPRF-203ENST00000372407 XKR6Q5GH73 641 aa11.43□□□□□ -0.58
PTPRF-203ENST00000372407 CNSTQ6PJW8 725 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms