RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MEAF6Q9HAF1 191 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 UTP6Q9NYH9 597 aaKnown RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 FLRT1Q9NZU1 646 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 EBF1Q9UH73 591 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 USP22Q9UPT9 525 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 ACTL7AQ9Y615 435 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 ZFC3H1O60293 1989 aaKnown RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 A0A1B0GTL3 188 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 MBLAC1A4D2B0 266 aaPredicted RBP12.15□□□□□ -0.47
CLIP3-201ENST00000360535 SLC22A2O15244 555 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 OXTRP30559 389 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 DIO3P55073 304 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 EFEMP1Q12805 493 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 FRG1Q14331 258 aaKnown RBP12.15□□□□□ -0.47
CLIP3-201ENST00000360535 CYP51A1Q16850 503 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 ZIK1Q3SY52 487 aaPredicted RBP12.15□□□□□ -0.47
CLIP3-201ENST00000360535 ALFQ53S48 1182 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 OTUD3Q5T2D3 398 aaPredicted RBP12.15□□□□□ -0.47
CLIP3-201ENST00000360535 LIMS2Q7Z4I7 341 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 SPATA2LQ8IUW3 424 aaPredicted RBP12.15□□□□□ -0.47
CLIP3-201ENST00000360535 PCYOX1LQ8NBM8 494 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 OR2T34Q8NGX1 318 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 OR2T3Q8NH03 318 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 OLAHQ9NV23 265 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 SLC38A7Q9NVC3 462 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 DNAJC15Q9Y5T4 150 aa12.15□□□□□ -0.47
CLIP3-201ENST00000360535 TRIM24O15164 1050 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 SOAT2O75908 522 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CAPN3P20807 821 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ADRA1AP35348 466 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 RPL26P61254 145 aaKnown RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 APOFQ13790 326 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 PSMD5Q16401 504 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 TBC1D25Q3MII6 688 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 PABPC1LQ4VXU2 614 aaKnown RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 UNC50Q53HI1 259 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 XKR4Q5GH76 650 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 OVOS1Q6IE37 1185 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ISCA2Q86U28 154 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CNTN4Q8IWV2 1026 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 OR13J1Q8NGT2 312 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM74Q96NL1 305 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 SMIM14Q96QK8 99 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 AGO3Q9H9G7 860 aaKnown RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 SARS2Q9NP81 518 aaKnown RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 OAZ3Q9UMX2 235 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CDC14AQ9UNH5 594 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 PTCH2Q9Y6C5 1203 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 DHRS12A0PJE2 317 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ODC1P11926 461 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 SH3BGRP55822 239 aaPredicted RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 IHHQ14623 411 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 C16orf72Q14CZ0 275 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF678Q5SXM1 525 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CXCL17Q6UXB2 119 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 AGMOQ6ZNB7 445 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CILP2Q8IUL8 1156 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM86AQ8N2M4 240 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CALML6Q8TD86 181 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 MAGEE2Q8TD90 523 aaPredicted RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 NUDT8Q8WV74 236 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 TWIST2Q8WVJ9 160 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 CCDC126Q96EE4 140 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 PGAP3Q96FM1 320 aaPredicted RBP12.14□□□□□ -0.47
CLIP3-201ENST00000360535 TSPAN17Q96FV3 270 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 FAR2Q96K12 515 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 EXOC2Q96KP1 924 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF597Q96LX8 424 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 SMOXQ9NWM0 555 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 RRN3Q9NYV6 651 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 PHF24Q9UPV7 400 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 ZSWIM8A7E2V4 1837 aa12.14□□□□□ -0.47
CLIP3-201ENST00000360535 A0A0U1RQS6 177 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 H3BNH8 94 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GIPC1O14908 333 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 C8BP07358 591 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TFPTP0C1Z6 253 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 HSPA1AP0DMV8 641 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 HSPA1BP0DMV9 641 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 IMPDH1P20839 514 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 IL10P22301 178 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 EEF1B2P24534 225 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CSRP3P50461 194 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CLCN5P51795 746 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 YWHAHQ04917 246 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 ACAP2Q15057 778 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 NEDD8Q15843 81 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SLC39A12Q504Y0 691 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CYHR1Q6ZMK1 362 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 FIBCD1Q8N539 461 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 NAT16Q8N8M0 369 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 VPS50Q96JG6 964 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TSGA13Q96PP4 275 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 EPB41L1Q9H4G0 881 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 MRPL40Q9NQ50 206 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 PNPLA3Q9NST1 481 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TBC1D13Q9NVG8 400 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 THEGQ9P2T0 379 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TMCO1Q9UM00 188 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 NDUFAF1Q9Y375 327 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms