RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CCR5P51681 352 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 STC1P52823 247 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 PLTPP55058 493 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 NUMA1Q14980 2115 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 TAF1AQ15573 450 aaPredicted RBP22.17■■□□□ 1.14
SDC3-202ENST00000339394 C11orf74Q86VG3 221 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 TTC30BQ8N4P2 665 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 KLK6Q92876 244 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 PWWP2AQ96N64 755 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 C1QTNF2Q9BXJ5 285 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 SLC17A9Q9BYT1 436 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 IL22Q9GZX6 179 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 PCED1AQ9H1Q7 454 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 METTL12A8MUP2 240 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 LDB2O43679 373 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 LZTS3O60299 673 aaPredicted RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 LILRB5O75023 590 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 PAK4O96013 591 aaPredicted RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 MGAT1P26572 445 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 ETV3P41162 512 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 TUBB4BP68371 445 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 CRADDP78560 199 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 TCF15Q12870 199 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FGL2Q14314 439 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 ACOX1Q15067 660 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 CCDC38Q502W7 563 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FNBP1LQ5T0N5 605 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 ZDHHC24Q6UX98 284 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 SLC41A1Q8IVJ1 513 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 PRSS33Q8NF86 280 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FBXO25Q8TCJ0 367 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 COQ10AQ96MF6 247 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FRMD8Q9BZ67 464 aaPredicted RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 DUSP15Q9H1R2 295 aaPredicted RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 EBF2Q9HAK2 575 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 C2orf81A6NN90 581 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 BUD23O43709 281 aaKnown RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 RECQL5O94762 991 aaPredicted RBP22.16■■□□□ 1.14
SDC3-202ENST00000339394 CRTAMO95727 393 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 CREB5Q02930 508 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 CAV1Q03135 178 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 SGCGQ13326 291 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 SPDYCQ5MJ68 293 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 RFLNAQ6ZTI6 216 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 Q6ZVL8 140 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 LPCAT2Q7L5N7 544 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 IFT81Q8WYA0 676 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FOXJ1Q92949 421 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 GDF3Q9NR23 364 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 FAM114A2Q9NRY5 505 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 IL17CQ9P0M4 197 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 KCTD3Q9Y597 815 aa22.16■■□□□ 1.14
SDC3-202ENST00000339394 SDR42E2A6NKP2 422 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 SLC31A1O15431 190 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 LPOP22079 712 aaPredicted RBP22.15■■□□□ 1.14
SDC3-202ENST00000339394 ADRA1DP25100 572 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 PTGER3P43115 390 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 SPINT3P49223 89 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 SEPT6Q14141 434 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 PTPRCAPQ14761 206 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 PLK5Q496M5 336 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 PMS2CLQ68D20 193 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 CEP68Q76N32 757 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 TECPR1Q7Z6L1 1165 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 PDIK1LQ8N165 341 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 AGGF1Q8N302 714 aaeCLIP22.15■■□□□ 1.141e-7■■■■■ 124.8
SDC3-202ENST00000339394 MPP5Q8N3R9 675 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 HSPA12BQ96MM6 686 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 BPIFA1Q9NP55 256 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 SYBUQ9NX95 663 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 R4GN57 208 aa22.15■■□□□ 1.14
SDC3-202ENST00000339394 HEATR9A2RTY3 570 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 MROH6A6NGR9 719 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 WNT9AO14904 365 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 PDE1BQ01064 536 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 SIM2Q14190 667 aaPredicted RBP22.14■■□□□ 1.13
SDC3-202ENST00000339394 AGERQ15109 404 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 HIF1AQ16665 826 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 MSS51Q4VC12 460 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 PCID2Q5JVF3 399 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 RAVER1Q8IY67 606 aaKnown RBP22.14■■□□□ 1.13
SDC3-202ENST00000339394 ZCCHC9Q8N567 271 aaKnown RBP22.14■■□□□ 1.13
SDC3-202ENST00000339394 OR4K2Q8NGD2 314 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 DTD2Q96FN9 168 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 ZC3H10Q96K80 434 aaKnown RBP22.14■■□□□ 1.13
SDC3-202ENST00000339394 SIGLEC10Q96LC7 697 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 RANBP9Q96S59 729 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 EPC1Q9H2F5 836 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 CHRAC1Q9NRG0 131 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 ZDHHC18Q9NUE0 388 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 PKP3Q9Y446 797 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 TCAF1Q9Y4C2 921 aa22.14■■□□□ 1.13
SDC3-202ENST00000339394 STX7O15400 261 aaKnown RBP22.13■■□□□ 1.13
SDC3-202ENST00000339394 PPFIA2O75334 1257 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 CARSP49589 748 aaKnown RBP22.13■■□□□ 1.13
SDC3-202ENST00000339394 ARL4CP56559 192 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 SETMARQ53H47 684 aaPredicted RBP22.13■■□□□ 1.13
SDC3-202ENST00000339394 ZC3H14Q6PJT7 736 aaKnown RBP22.13■■□□□ 1.13
SDC3-202ENST00000339394 ARMCX6Q7L4S7 300 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 CYP2U1Q7Z449 544 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms