RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 FBXL12Q9NXK8 326 aa16.53■□□□□ 0.24
PDLIM1-201ENST00000329399 SEPT3Q9UH03 358 aa16.53■□□□□ 0.24
PDLIM1-201ENST00000329399 PPM1HQ9ULR3 514 aa16.53■□□□□ 0.24
PDLIM1-201ENST00000329399 PCDHGA5Q9Y5G8 931 aa16.53■□□□□ 0.24
PDLIM1-201ENST00000329399 MAD1L1Q9Y6D9 718 aa16.53■□□□□ 0.24
PDLIM1-201ENST00000329399 TNRC6BQ9UPQ9 1833 aaKnown RBP16.52■□□□□ 0.24
PDLIM1-201ENST00000329399 TCRBV9S1A1TA0A576 114 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 AVILO75366 819 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 IL1BP01584 269 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 EPOP01588 193 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 DNTTP04053 509 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 GKP32189 559 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 SERPINH1P50454 418 aaKnown RBP16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 SLC18A1P54219 525 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 IRX4P78413 519 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 ILF2Q12905 390 aaKnown RBP16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 TERF2Q15554 542 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 RALGPS1Q5JS13 557 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 LYSMD4Q5XG99 296 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 DPY19L3Q6ZPD9 716 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 ARHGAP36Q6ZRI8 547 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 PRR23CQ6ZRP0 262 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 CYP2U1Q7Z449 544 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 C11orf74Q86VG3 221 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 LRRC6Q86X45 466 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 ZNF354CQ86Y25 554 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 TBL1YQ9BQ87 522 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 POLR1EQ9GZS1 481 aaKnown RBP16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 MRM3Q9HC36 420 aaKnown RBP16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 SSU72Q9NP77 194 aaKnown RBP16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 CACNA1EQ15878 2313 aa16.52■□□□□ 0.23
PDLIM1-201ENST00000329399 IQANK1A0A1B0GTG1 560 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 FAM237BA0A1B0GVD1 139 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 J3KR12 359 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 NDUFS2O75306 463 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 FAM155BO75949 473 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 USP1O94782 785 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 HLA-DQB2P05538 268 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 SERPINB9P50453 376 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 ZBTB16Q05516 673 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 ELAVL3Q14576 367 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 INO80DQ53TQ3 878 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 C22orf39Q6P5X5 142 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 SLC26A11Q86WA9 606 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 IGDCC3Q8IVU1 814 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 SLC44A1Q8WWI5 657 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 ALKBH8Q96BT7 664 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 RMDN1Q96DB5 314 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 MTBPQ96DY7 904 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 GORASP1Q9BQQ3 440 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 WDR83Q9BRX9 315 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 MLPHQ9BV36 600 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 CAPS2Q9BXY5 557 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 CEP41Q9BYV8 373 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 FBRSQ9HAH7 460 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 EBF2Q9HAK2 575 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 PDFQ9HBH1 243 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 MOCS1Q9NZB8 636 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 DOCK9Q9BZ29 2069 aa16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 NYNRINQ9P2P1 1898 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-201ENST00000329399 METTL12A8MUP2 240 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 C10orf142B7Z368 130 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 SHOX2O60902 331 aaPredicted RBP16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 LRP3O75074 770 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 RNASEH2AO75792 299 aaKnown RBP16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 INHBAP08476 426 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 OXTRP30559 389 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 SLCO1A2P46721 670 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 DNAJC3Q13217 504 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 ZNF235Q14590 738 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 HP1BP3Q5SSJ5 553 aaPredicted RBP16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 CASC4Q6P4E1 433 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 UNC5AQ6ZN44 842 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 TMEM135Q86UB9 458 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 SYT12Q8IV01 421 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 HDDC3Q8N4P3 179 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 OR6K2Q8NGY2 324 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 C1orf216Q8TAB5 229 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 GABPB2Q8TAK5 448 aaPredicted RBP16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 PIP4K2CQ8TBX8 421 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 GANCQ8TET4 914 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 TADA1Q96BN2 335 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 PSKH2Q96QS6 385 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 FSD1LQ9BXM9 530 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 TM6SF2Q9BZW4 377 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 UBA2Q9UBT2 640 aaPredicted RBP16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 WASF2Q9Y6W5 498 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 CACNA1AO00555 2505 aa16.5■□□□□ 0.23
PDLIM1-201ENST00000329399 FAM47DPA6NHR8 397 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 FAM159BA6NKW6 160 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 SMIM23A6NLE4 172 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 POC1B-GALNT4F8VUJ3 575 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 RNASEH1O60930 286 aaKnown RBP16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 ADRA1AP35348 466 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 SLC20A2Q08357 652 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 CNTN1Q12860 1018 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 ARSIQ5FYB1 569 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 PCID2Q5JVF3 399 aa16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 ATXN7L2Q5T6C5 722 aaPredicted RBP16.49■□□□□ 0.23
PDLIM1-201ENST00000329399 PEAR1Q5VY43 1037 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms