RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CYP2B6P20813 491 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CD86P42081 329 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TMIEQ8NEW7 156 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 RERGQ96A58 199 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TSPAN18Q96SJ8 248 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 UXTQ9UBK9 157 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CDH22Q9UJ99 828 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 BTRCQ9Y297 605 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 DPPA5A6NC42 116 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 AIREO43918 545 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TIE1P35590 1138 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 GALNT5Q7Z7M9 940 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 RASAL3Q86YV0 1011 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 INO80EQ8NBZ0 244 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 EFHD2Q96C19 240 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ASB7Q9H672 318 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 A0A0J9YYE9 177 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ANGPTL1O95841 491 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 DNTTP04053 509 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 NELFEP18615 380 aaKnown RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 RAB27AP51159 221 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 RD3Q7Z3Z2 195 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 DSELQ8IZU8 1212 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 RAB2BQ8WUD1 216 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 MEMO1Q9Y316 297 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CASTOR2A6NHX0 329 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 SP100P23497 879 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 BMT2Q1RMZ1 405 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 BEND5Q7L4P6 421 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ABCC13Q9NSE7 274 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CAPN8A6NHC0 703 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 PLCZ1Q86YW0 608 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TNS4Q8IZW8 715 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 HASPINQ8TF76 798 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ASB8Q9H765 288 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 MAT2BQ9NZL9 334 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 PDP1Q9P0J1 537 aaPredicted RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 MAP10Q9P2G4 905 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 GPR75-ASB3A0A0A6YYF3 556 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CYP1A2P05177 515 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ZSCAN5DPP0CG00 497 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ECT2LQ008S8 904 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 PAN2Q504Q3 1202 aaKnown RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF730Q6ZMV8 503 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 QSOX2Q6ZRP7 698 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TRIM74Q86UV6 250 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TRIM73Q86UV7 250 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 CIB1Q99828 191 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 NCANO14594 1321 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 ARP10275 920 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MAMLD1Q13495 774 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PSMD5Q16401 504 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 HECTD3Q5T447 861 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 RTL4Q6ZR62 310 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 USP43Q70EL4 1123 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 DEFB106AQ8N104 65 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ATG4CQ96DT6 458 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 NXF3Q9H4D5 531 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MAPK8P45983 427 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 HSPA14Q0VDF9 509 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 JAZF1Q86VZ6 243 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF433Q8N7K0 673 aaPredicted RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ADAM32Q8TC27 787 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 TSEN15Q8WW01 171 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PNMA5Q96PV4 448 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 RHBGQ9H310 441 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PXMP2Q9NR77 195 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 WDR37Q9Y2I8 494 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 EDF1O60869 148 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 NOS2P35228 1153 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 DOK6Q6PKX4 331 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 GALNTL5Q7Z4T8 443 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF567Q8N184 647 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 COPS4Q9BT78 406 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 SNX15Q9NRS6 342 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 GRHL1Q9NZI5 618 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 NCKAP1Q9Y2A7 1128 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 FADS2P1A8MWK0 482 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 CCNB1P14635 433 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 CRADDP78560 199 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 SLITRK4Q8IW52 837 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 IFT46Q9NQC8 304 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 EIF3KQ9UBQ5 218 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 TRPS1Q9UHF7 1281 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 LDLRAP1Q5SW96 308 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ANGEL2Q5VTE6 544 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 TAPT1Q6NXT6 567 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 RNF31Q96EP0 1072 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 NODALQ96S42 347 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 EBNA1BP2Q99848 306 aaKnown RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ATPIF1Q9UII2 106 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 U3KQV3 271 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PRR5-ARHGAP8B1AHC4 643 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ALDH2P05091 517 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 USP17L7P0C7H9 530 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ARHGAP8P85298 464 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 DEFA5Q01523 94 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PPATQ06203 517 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 SNAPC1Q16533 368 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ZZZ3Q8IYH5 903 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms