RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DPP7Q9UHL4 492 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 FAM50BQ9Y247 325 aa16.51■□□□□ 0.23
USP4-201ENST00000265560 ARIH1Q9Y4X5 557 aaPredicted RBP16.51■□□□□ 0.23
USP4-201ENST00000265560 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 LPOP22079 712 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 FMO4P31512 558 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 HNF1BP35680 557 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 KDSRQ06136 332 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 KCNC3Q14003 757 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 TAF1AQ15573 450 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 UGP2Q16851 508 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 EML3Q32P44 896 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 PDE12Q6L8Q7 609 aaKnown RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 FAM151BQ6UXP7 276 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ACMSDQ8TDX5 336 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ANKRD49Q8WVL7 239 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 RPP25Q9BUL9 199 aaKnown RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 SFXN1Q9H9B4 322 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 NEMP2A6NFY4 417 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 TRAFD1O14545 582 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 FZD6O60353 706 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 IGSF6O95976 241 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ARRB2P32121 409 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 HECTD2Q5U5R9 776 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 SYCE2Q6PIF2 218 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 TAS2R42Q7RTR8 314 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 NMRAL1Q9HBL8 299 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 SLC25A13Q9UJS0 675 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ACOT9Q9Y305 439 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 WASH3PC4AMC7 463 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ADH5P11766 374 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 POLR2EP19388 210 aaKnown RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 MAGEA12P43365 314 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 LEPRP48357 1165 aaKnown RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 MYLK3Q32MK0 819 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 FSTL5Q8N475 847 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 NXPE3Q969Y0 559 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 NLE1Q9NVX2 485 aaPredicted RBP16.5■□□□□ 0.23
USP4-201ENST00000265560 NSMCE4AQ9NXX6 385 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 GALPQ9UBC7 116 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 ZNF711Q9Y462 761 aa16.5■□□□□ 0.23
USP4-201ENST00000265560 TULP3O75386 442 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 HLA-EP13747 358 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 PFKLP17858 780 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 ELMSAN1Q6PJG2 1045 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 C6orf89Q6UWU4 347 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 TMEM207Q6UWW9 146 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 NAPRTQ6XQN6 538 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 RPS27LQ71UM5 84 aaKnown RBP16.49■□□□□ 0.23
USP4-201ENST00000265560 NLRP9Q7RTR0 991 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 CALML6Q8TD86 181 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 BPIFB1Q8TDL5 484 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 TIFAQ96CG3 184 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 KXD1Q9BQD3 176 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 C1QTNF1Q9BXJ1 281 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 ATP13A3Q9H7F0 1226 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 GPAMQ9HCL2 828 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 COPG2Q9UBF2 871 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 PIKFYVEQ9Y2I7 2098 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 NPIPB15A6NHN6 443 aaPredicted RBP16.49■□□□□ 0.23
USP4-201ENST00000265560 IQCF5A8MTL0 148 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 CCDC166P0CW27 439 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 CPA3P15088 417 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 UGT1A6P19224 532 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 UGT1A1P22309 533 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 UGT1A4P22310 534 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 UGT1A3P35503 534 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 UGT1A5P35504 534 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 DGKGP49619 791 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 PLK1P53350 603 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 AP1S1P61966 158 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 SNRPD1P62314 119 aaKnown RBP16.49■□□□□ 0.23
USP4-201ENST00000265560 PEX6Q13608 980 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 TAF1BQ53T94 588 aaPredicted RBP16.49■□□□□ 0.23
USP4-201ENST00000265560 RTL10Q7L3V2 364 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 TTC30BQ8N4P2 665 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 ANKS4BQ8N8V4 417 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 HEXDCQ8WVB3 486 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 SMARCD2Q92925 531 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 PLA2G2FQ9BZM2 168 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 HS3ST2Q9Y278 367 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 VWA7Q9Y334 891 aa16.49■□□□□ 0.23
USP4-201ENST00000265560 PRRT4C9JH25 899 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SBK3P0C264 359 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 KYAT3Q6YP21 454 aaKnown RBP16.48■□□□□ 0.23
USP4-201ENST00000265560 CLEC14AQ86T13 490 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 CACUL1Q86Y37 369 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 OSCP1Q8WVF1 389 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 EXT2Q93063 718 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SIRPGQ9P1W8 387 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 XPR1Q9UBH6 696 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 NUMBLQ9Y6R0 609 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SIN3BO75182 1162 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 MPOP05164 745 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 FGF3P11487 239 aaPredicted RBP16.48■□□□□ 0.23
USP4-201ENST00000265560 CES1P23141 567 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SLC12A1Q13621 1099 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 MRNIPQ6NTE8 343 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 OR2A12Q8NGT7 310 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 KLHL32Q96NJ5 620 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms