RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 ECHS1P30084 290 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 MMP12P39900 470 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PTSQ03393 145 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CSTF1Q05048 431 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 RALGDSQ12967 914 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 ARHGEF7Q14155 803 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 HLTFQ14527 1009 aaKnown RBP eCLIP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PTPRRQ15256 657 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 HIF1AQ16665 826 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 MAP7D1Q3KQU3 841 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 USP39Q53GS9 565 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 DNAJC21Q5F1R6 531 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 LIPIQ6XZB0 460 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CENPUQ71F23 418 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 NLRP9Q7RTR0 991 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 WDR5BQ86VZ2 330 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CCNJLQ8IV13 435 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 BLOC1S5Q8TDH9 187 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PTCD2Q8WV60 388 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 SMIM14Q96QK8 99 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 FAM126AQ9BYI3 521 aaPredicted RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 TPSD1Q9BZJ3 242 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 GPR63Q9BZJ6 419 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 ZFYVE1Q9HBF4 777 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 MRM3Q9HC36 420 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PREBQ9HCU5 417 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PIH1D1Q9NWS0 290 aaKnown RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CYP8B1Q9UNU6 501 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 ZNF711Q9Y462 761 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 V9GYY5 206 aaPredicted RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 TBC1D3DA0A087WVF3 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3IA0A087WXS9 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3EA0A087X179 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3KA0A087X1G2 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 IGHV1OR15-9A0A0B4J2B8 117 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 C1orf232A0A0U1RR37 186 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 HEATR9A2RTY3 570 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 RGSL1A5PLK6 1076 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3FA6NER0 549 aaPredicted RBP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LRRC72A6NJI9 287 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 C2orf81A6NN90 581 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 A8MX80 341 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3LB9A6J9 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 NEMP1O14524 444 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 SPINT1O43278 529 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LDB2O43679 373 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PCDH8O95206 1070 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3HP0C7X1 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PIRTP0C851 137 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LPOP22079 712 aaPredicted RBP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PSMA3P25788 255 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 CD6P30203 668 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 ACSL1P33121 698 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 HMGCLP35914 325 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PXNP49023 591 aaPredicted RBP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 ADPRHP54922 357 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 CREB5Q02930 508 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 DHX9Q08211 1270 aaKnown RBP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 POU6F1Q14863 301 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 ZNF528Q3MIS6 628 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 BBS9Q3SYG4 887 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 MSS51Q4VC12 460 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LRRC73Q5JTD7 316 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LRRC66Q68CR7 880 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3GQ6DHY5 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3CQ6IPX1 549 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 KIAA1161Q6NSJ0 714 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TSSK4Q6SA08 328 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 GLT6D1Q7Z4J2 308 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 LONP2Q86WA8 852 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TBC1D3Q8IZP1 549 aaPredicted RBP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TTC30BQ8N4P2 665 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 OR2T34Q8NGX1 318 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 CXorf40AQ8TE69 158 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 STYXQ8WUJ0 223 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PEX13Q92968 403 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PWWP2AQ96N64 755 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 NAT9Q9BTE0 207 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 KIFC1Q9BW19 673 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 C1QTNF1Q9BXJ1 281 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 PARD6BQ9BYG5 372 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 SYBUQ9NX95 663 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 KCTD5Q9NXV2 234 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.33□□□□□ -0.44
LINC00339-213ENST00000642137 IL17CQ9P0M4 197 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 RAB21Q9UL25 225 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 NFU1Q9UMS0 254 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 SOX13Q9UN79 622 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 TCAF1Q9Y4C2 921 aa12.33□□□□□ -0.44
LINC00339-213ENST00000642137 FAM237BA0A1B0GVD1 139 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 MROH6A6NGR9 719 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 C10orf142B7Z368 130 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 AURKAO14965 403 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 CTIFO43310 598 aaKnown RBP12.32□□□□□ -0.44
LINC00339-213ENST00000642137 MMP20O60882 483 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 SEMA4FO95754 770 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 ELFN1P0C7U0 828 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 LHCGRP22888 699 aa12.32□□□□□ -0.44
LINC00339-213ENST00000642137 LIG3P49916 1009 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms