RNA–Protein interactions for RNA: ENST00000622963.3

SNHG5-213, Transcript of small nucleolar RNA host gene 5, human

TSL 5 BASIC

Gene SNHG5, Length 753 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG5-213	ENST00000622963	POP4	O95707	220 aa	Known RBP	11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	FUCA1	P04066	466 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	THRA	P10827	490 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	GM2A	P17900	193 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	BMP6	P22004	513 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	F8A1	P23610	371 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	HTR1B	P28222	390 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	ALDH4A1	P30038	563 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	CLCN1	P35523	988 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	FLT3	P36888	993 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	LIMK2	P53671	638 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	RNASE9	P60153	205 aa	Known RBP	11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	DEUP1	Q05D60	604 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	MTA1	Q13330	715 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	MANEAL	Q5VSG8	457 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	LRRC31	Q6UY01	552 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	BNIPL	Q7Z465	357 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	NLRP14	Q86W24	1093 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	OR56A4	Q8NGH8	313 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	SSC4D	Q8WTU2	575 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	APOBEC4	Q8WW27	367 aa	Known RBP	11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	DDA1	Q9BW61	102 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	LGR4	Q9BXB1	951 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	OSBPL1A	Q9BXW6	950 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	ZYG11B	Q9C0D3	744 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	PCDH12	Q9NPG4	1184 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	SLC39A1	Q9NY26	324 aa		11.74	□□□□□ -0.53
SNHG5-213	ENST00000622963	CRYBG3	Q68DQ2	2970 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	EFCAB7	A8K855	629 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM72C	H0Y354	149 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	P4HA2	O15460	535 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	ZNF202	O95125	648 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FGF1	P05230	155 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FURIN	P09958	794 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	DCT	P40126	519 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	KIAA1024L	P59773	190 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	SNRPD1	P62314	119 aa	Known RBP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	LRRC63	Q05C16	580 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	MTM1	Q13496	603 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	CCDC40	Q4G0X9	1142 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FHL5	Q5TD97	284 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM72A	Q5TYM5	149 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM72D	Q6L9T8	149 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM72B	Q86X60	149 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM131B	Q86XD5	332 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	HSCB	Q8IWL3	235 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	STARD8	Q92502	1023 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	RTP4	Q96DX8	246 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	EXOC2	Q96KP1	924 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	CTRC	Q99895	268 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	NOL6	Q9H6R4	1146 aa	Known RBP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	CYP4F12	Q9HCS2	524 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	APMAP	Q9HDC9	416 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	DKK3	Q9UBP4	350 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	LHX3	Q9UBR4	397 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	DNAI1	Q9UI46	699 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	PCDHGC3	Q9UN70	934 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	KCNMB2	Q9Y691	235 aa		11.73	□□□□□ -0.53
SNHG5-213	ENST00000622963	TSPAN11	A1L157	253 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	PPM1D	O15297	605 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	ECEL1	O95672	775 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	CLDN1	O95832	211 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	PNMA6A	P0CW24	399 aa	Predicted RBP	11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	AK4	P27144	223 aa	Predicted RBP	11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	MMP12	P39900	470 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	LIG3	P49916	1009 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	RALGDS	Q12967	914 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	POLD3	Q15054	466 aa	Predicted RBP	11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	AGER	Q15109	404 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	C2CD6	Q53TS8	623 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	TTI2	Q6NXR4	508 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	C16orf46	Q6P387	395 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	TMEM135	Q86UB9	458 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	FAM129C	Q86XR2	697 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	TRIM59	Q8IWR1	403 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	AGBL5	Q8NDL9	886 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	HMCES	Q96FZ2	354 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	SPATA32	Q96LK8	384 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	GDAP1L1	Q96MZ0	367 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	ZDHHC9	Q9Y397	364 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	HIVEP3	Q5T1R4	2406 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	MED13	Q9UHV7	2174 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	SHANK1	Q9Y566	2161 aa		11.72	□□□□□ -0.53
SNHG5-213	ENST00000622963	IGHV1OR21-1	A0A087WYE8	117 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	RHPN2P1	A8MT19	583 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963		B4E171	279 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	HSP90AA1	P07900	732 aa	Known RBP	11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	VSIG8	P0DPA2	414 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	VARS	P26640	1264 aa	Known RBP	11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	USP8	P40818	1118 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	TSPAN7	P41732	249 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.71	□□□□□ -0.53	4e-19	■□□□□ 10.1
SNHG5-213	ENST00000622963	SLC25A52	Q3SY17	297 aa		11.71	□□□□□ -0.53
SNHG5-213	ENST00000622963	ZNF761	Q86XN6	746 aa	Predicted RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms