RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ELFN1P0C7U0 828 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MTHFD2P13995 350 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 TMOD1P28289 359 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MCM2P49736 904 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 DNAJC3Q13217 504 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MUM1Q2TAK8 710 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ZSCAN23Q3MJ62 389 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 FHL5Q5TD97 284 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 FAM160B1Q5W0V3 765 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MZT2BQ6NZ67 158 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 SLC36A4Q6YBV0 504 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 CATSPER4Q7RTX7 472 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 KRT77Q7Z794 578 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MRPL10Q7Z7H8 261 aaKnown RBP4.63□□□□□ -1.67
LINC00540-201ENST00000611481 NAXEQ8NCW5 288 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 SEMA6DQ8NFY4 1073 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF564Q8TBZ8 553 aaPredicted RBP4.63□□□□□ -1.67
LINC00540-201ENST00000611481 TBC1D15Q8TC07 691 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 CD101Q93033 1021 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 TMEM125Q96AQ2 219 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 CYFIP2Q96F07 1278 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 VCPIP1Q96JH7 1222 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 POLR3CQ9BUI4 534 aaPredicted RBP4.63□□□□□ -1.67
LINC00540-201ENST00000611481 WDR12Q9GZL7 423 aaKnown RBP4.63□□□□□ -1.67
LINC00540-201ENST00000611481 SLC25A18Q9H1K4 315 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 IFT122Q9HBG6 1241 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ARFGAP3Q9NP61 516 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MMP17Q9ULZ9 603 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 EXOC6BQ9Y2D4 811 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA1Q9Y5H4 931 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 INSL5Q9Y5Q6 135 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 SDK2Q58EX2 2172 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 CCDC168Q8NDH2 2452 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 A0A087WZ62 844 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRAMEF33A0A0G2JMD5 474 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TCRBV21S2A2A0A5A6 115 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 LINC01548A6NM66 108 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 A6NNZ2 444 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRSS47A8MTI9 375 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 J3KRW8 73 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 DDX39AO00148 427 aaKnown RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TP73O15350 636 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 MAGEB2O15479 319 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRAMEF10O60809 474 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 SEC24AO95486 1093 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRAMEF12O95522 483 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRKCBP05771 671 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRR35P0CG20 571 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PRF1P14222 555 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ARSAP15289 507 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PCSK1P29120 753 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 MAPK9P45984 424 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ARPP19P56211 112 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 RPS7P62081 194 aaKnown RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 BNC1Q01954 994 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PPP3CAQ08209 521 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 SLFN5Q08AF3 891 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ARL13BQ3SXY8 428 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 FAM153CQ494X1 144 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF626Q68DY1 528 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 IL27RAQ6UWB1 636 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 RSRC2Q7L4I2 434 aaKnown RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 CLNKQ7Z7G1 428 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 CCDC60Q8IWA6 550 aaPredicted RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ZCCHC9Q8N567 271 aaKnown RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 LINC01465Q8N7H1 131 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 LEMD2Q8NC56 503 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 FAM156AQ8NDB6 213 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TOR1AIP2Q8NFQ8 470 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 CCDC26Q8TAB7 109 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 SLC30A5Q8TAD4 765 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 EXOC4Q96A65 974 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TEKT5Q96M29 485 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PPM1MQ96MI6 270 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TTC14Q96N46 770 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 HAPLN3Q96S86 360 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 SDF4Q9BRK5 362 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PAAF1Q9BRP4 392 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 CRB3Q9BUF7 120 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ADI1Q9BV57 179 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ACE2Q9BYF1 805 aaPredicted RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 AGO4Q9HCK5 861 aaKnown RBP4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF302Q9NR11 478 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 RASSF1Q9NS23 344 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 MTRRQ9UBK8 725 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ADAM21Q9UKJ8 722 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 TPCN1Q9ULQ1 816 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 ITIH6Q6UXX5 1313 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 PLXND1Q9Y4D7 1925 aa4.62□□□□□ -1.67
LINC00540-201ENST00000611481 IGKV6D-21A0A0A0MT36 114 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 A0A1B0GVC2 190 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TCRBV7S2A1N4TA0A589 114 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 CASTOR2A6NHX0 329 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 GOLGA8AA7E2F4 631 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 LINC00473A8K010 186 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 RASA4BC9J798 803 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 SGK1O00141 431 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TRIM38O00635 465 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ZBTB5O15062 677 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 RASA4O43374 803 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms