RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TNFP01375 233 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 ALPIP09923 528 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 LIPCP11150 499 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 GPD1P21695 349 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 TNFRSF8P28908 595 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 CCKBRP32239 447 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 MMP12P39900 470 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 ARSDP51689 593 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 GEMIN4P57678 1058 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 POLR2FP61218 127 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 RPL7AP62424 266 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 RAD51Q06609 339 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 RALGDSQ12967 914 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 CA9Q16790 459 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 CERCAMQ5T4B2 595 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 NKAIN2Q5VXU1 208 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 DENND2CQ68D51 928 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SPRED1Q7Z699 444 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SLFN11Q7Z7L1 901 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 GKN2Q86XP6 184 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 TP53INP2Q8IXH6 220 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 FSTL5Q8N475 847 aaPredicted RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 TSEN2Q8NCE0 465 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SCG3Q8WXD2 468 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 CENPIQ92674 756 aaPredicted RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 GRAMD1AQ96CP6 724 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 TBATAQ96M53 351 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 RBM15Q96T37 977 aaKnown RBP eCLIP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 C1QTNF7Q9BXJ2 289 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 STRADBQ9C0K7 418 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SUV39H2Q9H5I1 410 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 FAM207AQ9NSI2 230 aaPredicted RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SPATS2LQ9NUQ6 558 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 SEPT11Q9NVA2 429 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 LRIT1Q9P2V4 623 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 RECQL5O94762 991 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 FUCA1P04066 466 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 KRT3P12035 628 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 AK4P27144 223 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 HTR1BP28222 390 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ALDH4A1P30038 563 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 PTPN9P43378 593 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 BLKP51451 505 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 CDR2Q01850 454 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 OGDHQ02218 1023 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ZFP36L1Q07352 338 aaKnown RBP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 HLTFQ14527 1009 aaKnown RBP eCLIP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SKIDA1Q1XH10 827 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 MAP9Q49MG5 647 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 C14orf28Q4W4Y0 310 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 EFHC2Q5JST6 749 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 CFAP58Q5T655 872 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SPECC1LQ69YQ0 1117 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 STRADAQ7RTN6 431 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ZSCAN30Q86W11 494 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ZNF761Q86XN6 746 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 TICAM1Q8IUC6 712 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SLITRK4Q8IW52 837 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 MLKLQ8NB16 471 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 MSANTD4Q8NCY6 345 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 OR56A4Q8NGH8 313 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 WDR48Q8TAF3 677 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 FNIP1Q8TF40 1166 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM74Q96NL1 305 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 MCEEQ96PE7 176 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SMIM14Q96QK8 99 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 FUCA2Q9BTY2 467 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SELENOOQ9BVL4 669 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 STK33Q9BYT3 514 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 SLC39A8Q9C0K1 460 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 PDFQ9HBH1 243 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ADAM22Q9P0K1 906 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM9Q9P0T7 183 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 DKK3Q9UBP4 350 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 UBA2Q9UBT2 640 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ATP8A1Q9Y2Q0 1164 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 MFHAS1Q9Y4C4 1052 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 PLEKHM1Q9Y4G2 1056 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 ST14Q9Y5Y6 855 aa8.68□□□□□ -1.02
SHKBP1-220ENST00000599716 TRBV23OR9-2A0A075B6M9 112 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 TSPAN11A1L157 253 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 NVLO15381 856 aaKnown RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 UNGP13051 313 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 GLB1P16278 677 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 TNFAIP3P21580 790 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 SOX5P35711 763 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 MLLT3P42568 568 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 POLD2P49005 469 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 PEX5P50542 639 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 PAPOLAP51003 745 aaKnown RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 JAM2P57087 298 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 B4GALNT1Q00973 533 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 ELP6Q0PNE2 266 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 EIF3IQ13347 325 aaKnown RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 MTM1Q13496 603 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 ARHGEF7Q14155 803 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 BECN1Q14457 450 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 IGFBP7Q16270 282 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 INO80DQ53TQ3 878 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 TCP11X2Q5H9J9 407 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms