RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 PYROXD2Q8N2H3 581 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 SPC24Q8NBT2 197 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 EPS8L1Q8TE68 723 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 HMCESQ96FZ2 354 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 EXOC2Q96KP1 924 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 MRPL40Q9NQ50 206 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 SEPT11Q9NVA2 429 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 LHX3Q9UBR4 397 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 KLQ9UEF7 1012 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 DGKBQ9Y6T7 804 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 LRRK1Q38SD2 2015 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TSPAN11A1L157 253 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 ZSCAN5CA6NGD5 496 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 B4GAT1O43505 415 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 MFAP3LO75121 409 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TNFP01375 233 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 PCCBP05166 539 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 GLB1P16278 677 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TNFAIP3P21580 790 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 MAPK10P53779 464 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 B4GALNT1Q00973 533 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 CDR2Q01850 454 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 ELP6Q0PNE2 266 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TBX2Q13207 712 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 HLTFQ14527 1009 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 AGERQ15109 404 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 UGP2Q16851 508 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TDRD12Q587J7 1177 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 IRF2BP2Q7Z5L9 587 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 FAM46DQ8NEK8 389 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 CCL4L1Q8NHW4 92 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 SLC20A1Q8WUM9 679 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 WDR92Q96MX6 357 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 TMEM168Q9H0V1 697 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 SUV39H2Q9H5I1 410 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 FGF22Q9HCT0 170 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 SEPT10Q9P0V9 454 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 LRIT1Q9P2V4 623 aa16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 BZW2Q9Y6E2 419 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-215ENST00000597649 SKILP12757 684 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 CCL4P13236 92 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 PNLIPP16233 465 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 CHRNB2P17787 502 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 MMP8P22894 467 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 SDC4P31431 198 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 SUOXP51687 545 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 ARSDP51689 593 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 SERINC3Q13530 473 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 C16orf72Q14CZ0 275 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 STRADAQ7RTN6 431 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 TAF8Q7Z7C8 310 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 ZNF354CQ86Y25 554 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 RTL3Q8N8U3 475 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 SLC30A5Q8TAD4 765 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 HCAR2Q8TDS4 363 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 CASKIN2Q8WXE0 1202 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 JPH3Q8WXH2 748 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 TMEM159Q96B96 161 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 AGPAT1Q99943 283 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 HAUS4Q9H6D7 363 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 IMPACTQ9P2X3 320 aa16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 NOCTQ9UK39 431 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-215ENST00000597649 USP9XQ93008 2570 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 LRP4O75096 1905 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 NOTCH2Q04721 2471 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 RASA4BC9J798 803 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 RASA4O43374 803 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 CYP1A1P04798 512 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 SERPING1P05155 500 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 SFTPCP11686 197 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 GM2AP17900 193 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 XPAP23025 273 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 MMP12P39900 470 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 PRKCIP41743 596 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 PTPN9P43378 593 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 PTP4A2Q12974 167 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 MTM1Q13496 603 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 C14orf28Q4W4Y0 310 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 PHF19Q5T6S3 580 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 TRIM72Q6ZMU5 477 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 ZNF574Q6ZN55 896 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 CAMK1DQ8IU85 385 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 PELI3Q8N2H9 469 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 MSANTD4Q8NCY6 345 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 OR56A4Q8NGH8 313 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 FAM172AQ8WUF8 416 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 DNAJC7Q99615 494 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 CMKLR1Q99788 373 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 LGR4Q9BXB1 951 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 SLC25A18Q9H1K4 315 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 RDH14Q9HBH5 336 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 ABHD10Q9NUJ1 306 aa16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 GEMIN8Q9NWZ8 242 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 ARHGEF17Q96PE2 2063 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-215ENST00000597649 B4DGG1 531 aa16.52■□□□□ 0.24
SHKBP1-215ENST00000597649 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-215ENST00000597649 EPHB2P29323 1055 aa16.52■□□□□ 0.24
SHKBP1-215ENST00000597649 RFC1P35251 1148 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-215ENST00000597649 RGRP47804 291 aa16.52■□□□□ 0.24
SHKBP1-215ENST00000597649 OR1D5P58170 312 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms